MmuEX0032964 @ mm10
Exon Skipping
Gene
ENSMUSG00000028256 | Odf2l
Description
outer dense fiber of sperm tails 2-like [Source:MGI Symbol;Acc:MGI:1098600]
Coordinates
chr3:145118589-145126225:+
Coord C1 exon
chr3:145118589-145118782
Coord A exon
chr3:145124211-145124375
Coord C2 exon
chr3:145126093-145126225
Length
165 bp
Sequences
Splice sites
3' ss Seq
GAATAACATATGTTTCCTAGCTT
3' ss Score
1.95
5' ss Seq
CAGGTAGCC
5' ss Score
7.13
Exon sequences
Seq C1 exon
AAACCGCAGGCCGGTTACTAGCAACGTTGAGCTCCAAGGTGGACGCGCTCAGGCCGCCGCTGCCTGTTCTGGTGACTCGTCAGCTTCTCTCCCCGCGCTCCCTGCCCTTCCCTCTGGCCTCCTACTCTCTCTGCACTCTCCGCCTGCTGCAGTGACCCAGGGCCGGGCAGGCCTCAGAGAGGCCTCCGGCCATT
Seq A exon
CTTTCAGTGTCTGTGGAAAAGTTGTTGCTGAAGTGCCTGTAAAAGAGTCACTGAGTTGATGGAGATGCCTACTAGTGATGGAAGTCTTTCAGAGGGCCTGATTTCTTATCTCATCCGGGAGAGAGGATCTGCTCCACAGTGTGCCCCTGAGAAGCACCTCAGCAG
Seq C2 exon
GCTCAAGCAAGACGTCGCAAATACAAAGATGGAGTTGAAAGCAACGCTTAAGGAAGCTCAGTTGGCATCCTGTTCAGTTGAATTACTTTTGCCATTATTTAAGAACACTGTGGAAGGAATTAGTCTAGAAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028256-'1-6,'1-4,13-6
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.218 C2=0.025
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGGTTACTAGCAACGTTGA
R:
CAGGATGCCAACTGAGCTTCC
Band lengths:
257-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types