HsaEX0044607 @ hg38
Exon Skipping
Gene
ENSG00000122417 | ODF2L
Description
outer dense fiber of sperm tails 2 like [Source:HGNC Symbol;Acc:HGNC:29225]
Coordinates
chr1:86383134-86396262:-
Coord C1 exon
chr1:86396033-86396262
Coord A exon
chr1:86386915-86387086
Coord C2 exon
chr1:86383134-86383196
Length
172 bp
Sequences
Splice sites
3' ss Seq
ATAACTAAAATATTTCCTAGCTT
3' ss Score
2.78
5' ss Seq
CTGGTATTC
5' ss Score
1.5
Exon sequences
Seq C1 exon
CGGCAAGCAGGTCTAGGAATTCGCCTGGTTCCCACCTCGCGTCCCTTGCCTTCCTTCCTAGTCTACCCACTGTAGTGCCCCCTGCGTCCCGCTCCCTCCTAGCCGACTCAGAGCACAAGAAGGATTGCCACGGTTTCCATTGCAGCAGCCGTGGCGCCTCTGACCCTTTTTTTATATCGCGGCGACGGCGGGCTGTCGTCACGACGACGTGCGGACGCAGCGGCGGGGGC
Seq A exon
CTTTCAGCTTATGTGGAGAAGTCGCTGTGAAGCCACCTATAAATCCATTTACTGAATTTATGGAGAAGGCTGTAAATGATGGAAGTCATTCAGAAGAACTCTTTTGCCATCTTAAAACTATATCAGAGAAAGAAGATTTACCACGGTGTACCAGTGAAAGTCATCTCAGCTG
Seq C2 exon
ACAGGAGACAATTTATCCAGCATGTTGCTAGAAAATCTAACTGATAATGAAAGTGAAAATACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000122417_MULTIEX2-1/12=C1-4
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.105 C2=0.387
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGGTCTAGGAATTCGCCT
R:
GCAACATGCTGGATAAATTGTCTCC
Band lengths:
253-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development