HsaINT0117843 @ hg38
Intron Retention
Gene
ENSG00000122417 | ODF2L
Description
outer dense fiber of sperm tails 2 like [Source:HGNC Symbol;Acc:HGNC:29225]
Coordinates
chr1:86383134-86384801:-
Coord C1 exon
chr1:86384676-86384801
Coord A exon
chr1:86383197-86384675
Coord C2 exon
chr1:86383134-86383196
Length
1479 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGG
5' ss Score
7.66
3' ss Seq
TTATAACATTCTTTTCTCAGACA
3' ss Score
7.39
Exon sequences
Seq C1 exon
GCGAATCTTTCTGCATTGAATTTGAAGATTTCTGAACAGAAGGAAATATTAATAAAAGAATTAGACACCTTCAAAAGTGTAAAACTAGCTTTAGAACATCTTCTTAGAAAGAGAGACTACAAACAA
Seq A exon
GTAAGGCATCAACACTAAGCACTCATTTTAATAGTGATATTTCTCATTTGAAGGATACATTATTTTTAAACTGTAGAAATTATTGGTATATTTGAAATGGAAATAATGCTTTGAATTTTGTCAGTCATTAATCCCCACCTTTAGTGTTTCATAAGTAGTTGTATATGAACACCACGTTTTTATAGAAAATGTATTTTTATTTTTCATCTCAAAAACTTTGTCATACTTAATTGAGCTGATTCTAATAAAATATACACTTTTTGAGTTTAAGATCTTTGTACATTATATTTATACATATCTATATATTCTTCATCTGGTAAAAGCTTTATTGAAATAGAATTCACATACCATACAGTTCTTCCATTTAAATTATAAAATTCAGTGGTTTTCATTGTATTCACAGAGTTGTGCAGCCATCACCACAGTCAATTTTAAAGCATTTTTATCACTCCAAAAAGAAAGCTTATCCCTTTAAATCACCTAAATTATTCTTCTGACTCCCTTTTGGCTTTTTCCTATGATAAAAATTATTTCAGAATTGTAAAAACTATCTAATATTAGGTAATAGTTTTTGTAATTAAAAAGTTACATGCTCATAGAAAATTGTGATAAGCAGAGAAATATTCTCTTGATCTCAGCACTTAGTGAAACATCACTATTAAGAACTGTTAGTTTTATGTTGTGTACATTTTGCAGTATTTTGTTTCTTTATATATGTTACGTGTGCATATATACGTGGTGTTTTAGAAAAATGGAGTAAAACTACTATCTTTGTTTTGTAACTGGACTTTTATACTTAACACTGTATCATCAATATTTTCTCATGTATTGAATATTTTTTGAATAGAAAGGAATCTTAACTTGAGCTCTTTGAACACTTATGGATCCAAGGATGACCTTTATGAAATCCATGTACCCTCTGAAATTCCGTGTACAATTTTGCATTATATGTACATATATATGTGGTTTTGGGTGAAAAGAATTGATAGCTTTTTCACATTCTAAAGCAGAAGTATGACTCTCAAAAATGAGTAAATAGTCTTCTATGATCTCATTTAAAATGGCTATATAGAATTCTGTTACTGATTTGCTGTAATTCTTTAAGAGATTTCTTATTGCTAGAATTTAGATTGTTGATAATTTTTGCCTATTTGTAAACAGCACTGTGTTGCATTCTATACTCTATACAAACTCTATACAAACTTCTTTTGTATAGAGGATTTTTGTGAGTTTAGTGTCATTGGCCTATACTTTCTGAAGCATTCTTTTGAGATTAATTTAGTAAATTAACTAATTTCATAAATTGCAGACCAAAAATAATTTGGAATACTAGGGCAAAAATCTTTTCAGTTGTTAACTCTTTTAAAAATCTGAATTAAAAGTCATATTAATTTATTGAGTAGTGCTTATTTCACTTCCTACTTTTTTATATAGAGAAATATAATTTGCGATCACTGATTTATAACATTCTTTTCTCAG
Seq C2 exon
ACAGGAGACAATTTATCCAGCATGTTGCTAGAAAATCTAACTGATAATGAAAGTGAAAATACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000122417:ENST00000359242:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.387
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development