HsaINT0117843 @ hg19
Intron Retention
Gene
ENSG00000122417 | ODF2L
Description
outer dense fiber of sperm tails 2-like [Source:HGNC Symbol;Acc:29225]
Coordinates
chr1:86848817-86850484:-
Coord C1 exon
chr1:86850359-86850484
Coord A exon
chr1:86848880-86850358
Coord C2 exon
chr1:86848817-86848879
Length
1479 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGG
5' ss Score
7.66
3' ss Seq
TTATAACATTCTTTTCTCAGACA
3' ss Score
7.39
Exon sequences
Seq C1 exon
GCGAATCTTTCTGCATTGAATTTGAAGATTTCTGAACAGAAGGAAATATTAATAAAAGAATTAGACACCTTCAAAAGTGTAAAACTAGCTTTAGAACATCTTCTTAGAAAGAGAGACTACAAACAA
Seq A exon
GTAAGGCATCAACACTAAGCACTCATTTTAATAGTGATATTTCTCATTTGAAGGATACATTATTTTTAAACTGTAGAAATTATTGGTATATTTGAAATGGAAATAATGCTTTGAATTTTGTCAGTCATTAATCCCCACCTTTAGTGTTTCATAAGTAGTTGTATATGAACACCACGTTTTTATAGAAAATGTATTTTTATTTTTCATCTCAAAAACTTTGTCATACTTAATTGAGCTGATTCTAATAAAATATACACTTTTTGAGTTTAAGATCTTTGTACATTATATTTATACATATCTATATATTCTTCATCTGGTAAAAGCTTTATTGAAATAGAATTCACATACCATACAGTTCTTCCATTTAAATTATAAAATTCAGTGGTTTTCATTGTATTCACAGAGTTGTGCAGCCATCACCACAGTCAATTTTAAAGCATTTTTATCACTCCAAAAAGAAAGCTTATCCCTTTAAATCACCTAAATTATTCTTCTGACTCCCTTTTGGCTTTTTCCTATGATAAAAATTATTTCAGAATTGTAAAAACTATCTAATATTAGGTAATAGTTTTTGTAATTAAAAAGTTACATGCTCATAGAAAATTGTGATAAGCAGAGAAATATTCTCTTGATCTCAGCACTTAGTGAAACATCACTATTAAGAACTGTTAGTTTTATGTTGTGTACATTTTGCAGTATTTTGTTTCTTTATATATGTTACGTGTGCATATATACGTGGTGTTTTAGAAAAATGGAGTAAAACTACTATCTTTGTTTTGTAACTGGACTTTTATACTTAACACTGTATCATCAATATTTTCTCATGTATTGAATATTTTTTGAATAGAAAGGAATCTTAACTTGAGCTCTTTGAACACTTATGGATCCAAGGATGACCTTTATGAAATCCATGTACCCTCTGAAATTCCGTGTACAATTTTGCATTATATGTACATATATATGTGGTTTTGGGTGAAAAGAATTGATAGCTTTTTCACATTCTAAAGCAGAAGTATGACTCTCAAAAATGAGTAAATAGTCTTCTATGATCTCATTTAAAATGGCTATATAGAATTCTGTTACTGATTTGCTGTAATTCTTTAAGAGATTTCTTATTGCTAGAATTTAGATTGTTGATAATTTTTGCCTATTTGTAAACAGCACTGTGTTGCATTCTATACTCTATACAAACTCTATACAAACTTCTTTTGTATAGAGGATTTTTGTGAGTTTAGTGTCATTGGCCTATACTTTCTGAAGCATTCTTTTGAGATTAATTTAGTAAATTAACTAATTTCATAAATTGCAGACCAAAAATAATTTGGAATACTAGGGCAAAAATCTTTTCAGTTGTTAACTCTTTTAAAAATCTGAATTAAAAGTCATATTAATTTATTGAGTAGTGCTTATTTCACTTCCTACTTTTTTATATAGAGAAATATAATTTGCGATCACTGATTTATAACATTCTTTTCTCAG
Seq C2 exon
ACAGGAGACAATTTATCCAGCATGTTGCTAGAAAATCTAACTGATAATGAAAGTGAAAATACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000122417-ODF2L:NM_001184766:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.333
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)