GgaINT0038666 @ galGal3
Intron Retention
Gene
ENSGALG00000006804 | ODF2L
Description
NA
Coordinates
chr8:16704971-16706303:+
Coord C1 exon
chr8:16704971-16705105
Coord A exon
chr8:16705106-16706240
Coord C2 exon
chr8:16706241-16706303
Length
1135 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TTCCTGCTCTTGTCTTGCAGATA
3' ss Score
12.72
Exon sequences
Seq C1 exon
CAGGTTTGTAAACCTTCTACATCAGAAATGATAATTATTGATACACAGGAGGATTTGCTGGTGAAAGAATTAACAACACTCAAAACCACCAAAAGATTGTTATGGCTTTTACTTCAAACAAGAGAACAGAAACAG
Seq A exon
GTAAGATGATCCAAAGCAATCACTAGCTTCCTGTGGGAGCCAGGGGTCACGTGTCAGTGAATTGCAGGACAGGTTTTGAGTACCTGGACAATGGAAGGAGAGAGGATAGTCCCACAGGGAACTACTTTAAAATAATGGGGATGCAGAGAGATTAAGGAGATGGATGCACCTGGGGAGCCAGGTGGGCTGTGACAGGGTGCAGGAGCTGGTTAGGCACAGGTAGTTCCAGCTGGAAGAGACATGCTTATTTTAAAAGGATTGAAAACAGCTGTTCCAATTCTTGATACGGAGAGCAATATGCTTTGGAGAACAAGCACAGCACATAGTGGTATGTGCTGGAATACTGGGCACAACTTGACTGAAGGATTTGTTCTGCCCTCGTTCCGTGGCTAATAATTTAATTGCTGGTGCGTGTGTGATCTGGGACGCCTTATGGTGCTGACTGTCATTCAGAGCTTAGGTTATGTCTAATGGCATAAAATGCTGAGTTACCCTGTCTTCTTGGAGATGTTAGATTCATGCTCCTAGCAGTGGCACTAAAATGTTTTGGATGTACAAATTGAAAGTCCCACTATTTGTTTTGTTTTATTTATTTAAATTTAGTCCTCCTCCAAAATTTGTATTTTAAAATGTCATTGGCAGTGTTATAGCAACGTATGTTCTCCAAGATTTATAGAAAGAATTAACATAGATTGATTTTTCTTTTCTCTTAGGCTGTGTTTTATGTTTCATTCTTCAAGCTTTCATATCTAACTGAAGTTACTGAAAGCCTTTAACAGTTAATATTAGTCTGTAAAATATTATAGTTTGTACAGATACTTTTACTGTATTTGATTATGTGCTTAAATGTTATTTGAACACATAAGATTTTCAGACTGCTTTTTGCTGAAATAAATAAATTGGCGTATGGAATGACCCCACTTTGTTTTCCTCCACTGAGTAGTTTTATGCGCTAAATAAATTGAATCTTTAAGGTTTAAGCGACCAACTCTAAATAGCCCACAGGAGCACAAGTTTTAATGTTTATACGTACCGAACTGAAAATGAACTGAATAGTATGCCAGATTCAAAGCTAAACATTAAATCAACTGCAAACTGAAGTACTTTGCTAATATTTCCTGCTCTTGTCTTGCAG
Seq C2 exon
ATAGACGGCAAAAACATTGAAGCTTTGATACAGAAGTTAAGTGAAAATGAAACCCACAATACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006804:ENSGALT00000038838:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.095
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]