BtaINT0105374 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012907 | ODF2L
Description
Bos taurus outer dense fiber of sperm tails 2-like (ODF2L), mRNA. [Source:RefSeq mRNA;Acc:NM_001075993]
Coordinates
chr3:57827950-57830789:+
Coord C1 exon
chr3:57827950-57828082
Coord A exon
chr3:57828083-57830729
Coord C2 exon
chr3:57830730-57830789
Length
2647 bp
Sequences
Splice sites
5' ss Seq
AATGTGAGT
5' ss Score
7.8
3' ss Seq
ATAACTTCTTTTTTCCACAGAGA
3' ss Score
10.13
Exon sequences
Seq C1 exon
CCTAAAGCAGGACATCCAAAATGAGAAGACCGAATTGGAAGCATTGTTTAAGGAAGCCGAGTTAGCAACTTGTTCTGCAGAATTACTTCTGCCATTGTTTAAGGACACCATTGAAGAGATTAGTTTTGAAAAT
Seq A exon
GTGAGTACTTGACTAGTGAACATCTAATAAAATGAGGAGCTAGGATAATACTCAGAATGCATTAACTGAGGTCTCATATTCTTACAGTAATTATGCTCATACACTGGTATTTGATATAAAAAAATGCAAGTTTATCAATGTTCTTTTTTCCTATGTCATTAATTGCAATTCTTTCTGTCAAAGATAATCTCAGGAATGCACTTGATGAGAGGCCAGGCTAGAAATTGTGTACCTCGGTGCTTGACTTACGTGGAGTTGAACTAGAGCCAAGAACTAGAACAAGAGTGAATTTAAAATATTCTGAGAGATGAAATATATTTTCTGTACTACCATGTGGATTAAAAACCTCTATTCTAAAATTACAGTGTATTAAAGTTTGAGTTAAGGGCAAATTGTATAATATTAGTTGTATTATAATAAATTCCTGAAATACTTTAGGGTTTAAGCCCTTATTTTGATTTCATTTTACTTTAGTATACCATGTAACAAATACTATTCACTACTCCAGTACTCTTGCCTGGAAAATCCCATGGATGGAGGAGCCTAGAAGGCTGCAGTCCATGGGGTCACTGAGGGTCAGACACGACTGAGCAACTTCACTTTCACTTTTCACTTTCATGCATTGGAAAAGGAAATGGCAATCCACTCCATTGTTCTTGCCTGGAGAATCCCAGGGACGTGGGAGCCTGGTGGACTGCCGTCTGTGGGGTCACACAGAGTCAGACAAGACTGAAGTGACTTAGCAGCAGCAGCTATAAACTTGGCAAATTTTACTATTTCTATGTGCAAAAGAGGGCCTCCCTGGAGGCTCAGTGGTAAAGAACCTACCTGCCAATACAGGAGACCTGTGTTCGATCCCTGGGTAAGGAAGATCCCCTGGAGTAGGAAATGGCAACCCACTCCAGTATTCTTGCCTGGGAAATCCCATGGACAAAGGAGCTTGGCGGGCTACAGTCCATGGGGTCACAAAGAGTTGGATATAACTTAGTGACTAAACAACAACAACAACAACATATGCAAAAGAATGATTTTCTTTACTGGGAAAAAATATTCTTTGCTAATAGTAGCATTACGTTTTAGAGTCTCTTAATGCAATGTCTTAAAATGTGTTTGTGGCTCTTATATTTTGTCAGGCTAATCTTTCTGCATCCAATTTGAAGATTTCTAAACAGACAGAAATATTAACAATAGAATTAGACACTTAAACGTGTAAAACAAACTTTAGAACATCTTCTTAGAAAGACAGAATACCAACAAGTAAGAAATGCTAAGCACTATTTCAATAGTGGTATTTCTCACTTGAAGGGTATATTGGTTCTTGAACTGTAGAAATTAAAATATTGGTATATTTGAAATGGAAATGATTCTTGAATTTTTGTTTGAAATGGCAATCATTAACCCCCACTTTCAGTGTTTCATGAGTAGTTTTACATGAAAGCAGCATATTTTATAGAAAACACATTTTTATTTTCAATCTCAAGAACTTTCATTATTTGTTTCACTTGATTTCAGTTACTATAAAAAACTCTTGGGATTTAAGCTCTTGTATTCATTTTATTTATGCATTCATATATTCTTTTTTTAACGGTTTTATTGAGATCTAATTCACATACTATACATTTCACTGGTACAAAGTGTGCAATTCAGTGATTTTTGGTATATTCACAGAATTGTGTAGTCATCACCATCAACTTTGGAGCATTTTCATAACTACAAATAGAAAACCTTCGCCCTTTAGAATTTTGCTTCTCATCCCCATCTACCCCTTCTTTGTCCATTATCTGCTTTTTCTGTGTCTGTGGATTTGCTAATTTCACATACTTTTTATCAAGTGAGTAAAAGTCGCTCAGTTGTGTCCCACTCTTTGCAACCCCATGGATTATATAGTCCATAGAATTCTCCAGGCCAGAATACTGGAGTGGGTAGCTTTTCCCTTCTCCAGGGGTCTTCCCAATCCAGGGATCAAACCCAGGTCTCCCACATTGCAGGCAGATTCTTTACCAGCTGAGCCACAAGGGAAGCCCAAGAACACTGGAGTGGGTAGCCTATCCCTTCTCCAGTGGATCTTCCTGACCCAGGAATTGAAGCAGGGTCTCCTGCATTGCAGGCAGATTCTTTACCAACTAAGCTATCAGGGAAGCTCTGATATTTTATATAAATAGAATCATATGGTATGTGTGACCCTCAAAGTGAATAAACATTTTCTGCATCCTCATTTAAAATATCTACATGGAATTCTTTTATTGATTTGCTATAATTCTTTAAAACATTTCTTTTTGGTAGACTTTAGGCTGCTTATAATTTTTACCTGTTTATAAACAGCATTGTGAGCCTCCTTTGTATACAAGGTTCTTGTGATTTTTATGTCATTGGCTTGTACTTTATGAGGCATTATTTAGAAATTAATTTTATAAATTGTGGACAAAAATTGATTTGGAACACTTAAGCAAAAATCTTTCTGGTTTTTAACTTTAAAGCTGAACTGTGCATGGTAGTTGTCCATATTAATTTCTTTGGAAGGCAGCTGTGATCACCACTATATGCTGCACCACATTAATTTCTTAATTTTGATGCTTAATCCACTTTCTGCTATTGTGTAGAGAAATATAGCTTGTGAACACTGATTTATAACTTCTTTTTTCCACAG
Seq C2 exon
AGAGGGGAAAGTTTATCCAACTTGTTAGAGAAACTAACTGATAATGAAAGTGAAAACATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012907:ENSBTAT00000017157:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.044 A=NA C2=0.250
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]