RnoINT0105068 @ rn6
Intron Retention
Gene
ENSRNOG00000014059 | Odf2l
Description
outer dense fiber of sperm tails 2-like [Source:RGD Symbol;Acc:1593831]
Coordinates
chr2:251004813-251006896:+
Coord C1 exon
chr2:251004813-251004941
Coord A exon
chr2:251004942-251006836
Coord C2 exon
chr2:251006837-251006896
Length
1895 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGG
5' ss Score
7.66
3' ss Seq
GTTGGTGATCTTTCTTACAGACA
3' ss Score
7.68
Exon sequences
Seq C1 exon
GCTAATCTTTCTGCATCCAATTTGAAGAAGATTTTTGAACAGAAGGACATATTATCAAAAGAATTAGACACTTTTAACCGTGTGAAATTAGCCTTAGAACATCTTATTAAACAGACAGACTATGAACAA
Seq A exon
GTAAGGCTCCCATGCTGTGTGCCCCTGCTGTAGCGACGCCTCCCCCTTGGAAGATACTTTATTTCTCTAACTGTGCATATAAAATACTGGTATTGAAACAGAAGTGATTCTTTGAATTTTTGTTTGCAATATTATTATTAAATGTCTATTTTTAATGTTAGTTAATTTAGCTGCTGTAGAAATGTTTAAGAGTCGCATAGTTTAAGCTCTCATATGTGTCATTGTTTATACACACTTTCTCCCCACACTAATAAAATGGTGCTGTGCATGGTTTTTCTGTTTCACGACTGTGAACTATCAGGCCAGCCTCTGGCTCCTCTTTACTCTTGGCTCCTCCTAGTGGCCATGGCTCACCCTTTCCCATTTCTTCCCACTCTGCCTACTCTCTCTGACATGTGGTCGCTACCTTTTTTACAGTTTTCTATAAAAATGTCTATAAAATCAGTTGTCATATTCCACATGTAAGAAACATCATGATCTTGCCCTTTTGTATTTGTTCTGCATGATTTTCACTTCTTCACTGTAAAGCAAATGGCAGGGTTAACTTTTTAATGACTGAACAGTATTTCATTGTGCATATACACCATGCATGGTATCCATTGACCCATCATTGTGCATATACACCATGCATGGTATCCATTGACCCATCATTGTGCATATACACCATGCATGGATCCATTGACCCATCAGTCGTTAGACACTTCGGTTGTCTGGGCTGATTTACATCCTCGTCAGTAGCATAGACAAGTCCCTGTCCTCCATGTCCTTGCCAGCACTTTGCTCCTCATCTTTTCCTAAGCTTTTGGTACTACTCAGTGTGGCTTAGATTTGATTTTGTCTGATGACCCGTGATGCTAAGCACTGCCCTGTACCTATTAACCATCTGTGTCTTTGAGAAATGCCTGTTTAGATCTATTGGTATTTTTTAAAACAATTAGTATCCTATTCAATTTATTCTATTTTTATTTTTATTTAATTAGCATTTATTGTTTTAAATAATGGGTTTCATGACATTTCAAATATGTGTATAATATATTTGAGCATTCTTCCACCTATTACCATATCCTGTTTCCCGCCCCCACTGCTAGAATTAAAGGTATAATGCCTCTTTTTAAATAGCACTCTGTGATTCTTTAGAAAATAGGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCGCATGTGTGTGTGTGATTTTTGTATATCATATCACTGACCTATACTTTTTGAGGCATTTTTTTGAGATTGATTAATTTAGCAAAGTACCTGATTGTAAATTATGTGCAAGACAATGCTGAGCCTTCAGGCAGCAGTCTCACCTAAGAGTCTGCGCGGTGCATGGCAGCTGCCTGTGCTGGTCTTTACGGGATGCCTGTGCTATGTTTTATTCTTTCCATTCAGAGCACATGCACAGTGCAGGACTGCCCTACCATCTCAGAGGTGTGTTCATTCACAGTCCATCTGCAGAGTTCACATTAAGAAATAGTTATAATTTAAGGACCAGAGATGTAGGTCAGTGAGAGACTGATTAACTGACATACACCATGCCCTGGGCTCAATTCTCAGGGAGGGAGGGGAGAGAATGACTGGCTATAGTGGAATTACTTAGGACGTTGGCTGGGTAAAGGATGGGTAGGGTTTTTGTTGTTGTTGTTGTTTTTGAAAAGATATACAAACTATAGAAACCAAAGCAAAATATTAAAATATAATTATATCAAGCTAAGAAGCTTCTAAAGTAAGATAGCACAGCATAGAGGTGATGTATAGATAGAAAATATTGGCAACCCCCTCCATGCGGGTCGATATCCATAGATAATGACTTCCCAAGCAAGACAGACAGTACTCGGGCTTAGAACTGTGGCTTCAGATGTTGGTGATCTTTCTTACAG
Seq C2 exon
ACAGGACCCCGTCCACCCTGCTTGTTGAAGGATCTCAGTGACAGTGACAGTGAGAACAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014059:ENSRNOT00000018905:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=NA C2=0.633
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTAATCTTTCTGCATCCAATTTGA
R:
TCTCACTGTCACTGTCACTGAGA
Band lengths:
184-2079
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]