HsaEX0044611 @ hg38
Exon Skipping
Gene
ENSG00000122417 | ODF2L
Description
outer dense fiber of sperm tails 2 like [Source:HGNC Symbol;Acc:HGNC:29225]
Coordinates
chr1:86360426-86396262:-
Coord C1 exon
chr1:86396033-86396262
Coord A exon
chr1:86383134-86383196
Coord C2 exon
chr1:86360426-86360536
Length
63 bp
Sequences
Splice sites
3' ss Seq
TTATAACATTCTTTTCTCAGACA
3' ss Score
7.39
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
CGGCAAGCAGGTCTAGGAATTCGCCTGGTTCCCACCTCGCGTCCCTTGCCTTCCTTCCTAGTCTACCCACTGTAGTGCCCCCTGCGTCCCGCTCCCTCCTAGCCGACTCAGAGCACAAGAAGGATTGCCACGGTTTCCATTGCAGCAGCCGTGGCGCCTCTGACCCTTTTTTTATATCGCGGCGACGGCGGGCTGTCGTCACGACGACGTGCGGACGCAGCGGCGGGGGC
Seq A exon
ACAGGAGACAATTTATCCAGCATGTTGCTAGAAAATCTAACTGATAATGAAAGTGAAAATACT
Seq C2 exon
ACTACACTTGCTGCTTTGAAGGATGAAGTTGTATCTGTTGAAAATGAACTCTCAGAATTGCAAGAAGTAGAAAAAAAACAGAAAACCCTTATTGAAATGTATAAAACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000122417_MULTIEX2-4/12=C1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.387 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0003816=Filament=FE(11.9=100),PF115593=ADIP=FE(25.5=100),PF131661=AAA_13=FE(17.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTGCCACGGTTTCCATTGC
R:
TCATCCTTCAAAGCAGCAAGTGT
Band lengths:
134-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development