HsaEX0044602 @ hg38
Exon Skipping
Gene
ENSG00000122417 | ODF2L
Description
outer dense fiber of sperm tails 2 like [Source:HGNC Symbol;Acc:HGNC:29225]
Coordinates
chr1:86376233-86383002:-
Coord C1 exon
chr1:86382931-86383002
Coord A exon
chr1:86382242-86382358
Coord C2 exon
chr1:86376233-86376418
Length
117 bp
Sequences
Splice sites
3' ss Seq
TCTCTTTCTCTTTGTTACAGGCA
3' ss Score
11.46
5' ss Seq
AAGGTTATA
5' ss Score
1.81
Exon sequences
Seq C1 exon
AATCTTAAGAAGAAGGTATTTGAAAAGGAGGCCCATATCCAAGAACTTTCTTGTTTGTTTCAGAGTGAAAAG
Seq A exon
GCAAATACTTTGAAAGCAAACCGTTTTTCCCAATCAGTAAAAGTAGTACATGAACGACTACAGATCCAAATTCATAAAAGGGAAGCCGAGAACGATAAGTTGAAAGAATATGTAAAG
Seq C2 exon
AGCTTAGAAACCAAGATAGCCAAGTGGAACCTGCAATCAAGAATGAATAAGAATGAGGCTATAGTGATGAAAGAAGCAAGTAGGCAAAAAACTGTAGCTTTAAAAAAGGCATCTAAAGTTTACAAACAAAGGCTTGACCATTTTACAGGAGCTATTGAAAAGCTTACTTCCCAAATTAGAGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000122417_MULTIEX2-6/12=5-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.208 A=0.002 C2=0.063
Domain overlap (PFAM):
C1:
NO
A:
PF0003816=Filament=PU(0.3=2.6)
C2:
PF0003816=Filament=PU(18.8=82.3)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTATTTGAAAAGGAGGCCCA
R:
TGATCTCTAATTTGGGAAGTAAGCT
Band lengths:
244-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development