HsaEX0044602 @ hg19
Exon Skipping
Gene
ENSG00000122417 | ODF2L
Description
outer dense fiber of sperm tails 2-like [Source:HGNC Symbol;Acc:29225]
Coordinates
chr1:86841916-86848685:-
Coord C1 exon
chr1:86848614-86848685
Coord A exon
chr1:86847925-86848041
Coord C2 exon
chr1:86841916-86842101
Length
117 bp
Sequences
Splice sites
3' ss Seq
TCTCTTTCTCTTTGTTACAGGCA
3' ss Score
11.46
5' ss Seq
AAGGTTATA
5' ss Score
1.81
Exon sequences
Seq C1 exon
AATCTTAAGAAGAAGGTATTTGAAAAGGAGGCCCATATCCAAGAACTTTCTTGTTTGTTTCAGAGTGAAAAG
Seq A exon
GCAAATACTTTGAAAGCAAACCGTTTTTCCCAATCAGTAAAAGTAGTACATGAACGACTACAGATCCAAATTCATAAAAGGGAAGCCGAGAACGATAAGTTGAAAGAATATGTAAAG
Seq C2 exon
AGCTTAGAAACCAAGATAGCCAAGTGGAACCTGCAATCAAGAATGAATAAGAATGAGGCTATAGTGATGAAAGAAGCAAGTAGGCAAAAAACTGTAGCTTTAAAAAAGGCATCTAAAGTTTACAAACAAAGGCTTGACCATTTTACAGGAGCTATTGAAAAGCTTACTTCCCAAATTAGAGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000122417-'8-13,'8-12,9-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.208 A=0.000 C2=0.070
Domain overlap (PFAM):
C1:
NO
A:
PF0003816=Filament=PU(2.6=20.5)
C2:
PF0003816=Filament=PU(18.8=82.3)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTATTTGAAAAGGAGGCCCA
R:
TGATCTCTAATTTGGGAAGTAAGCT
Band lengths:
244-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)