RnoEX6011862 @ rn6
Exon Skipping
Gene
ENSRNOG00000014059 | Odf2l
Description
outer dense fiber of sperm tails 2-like [Source:RGD Symbol;Acc:1593831]
Coordinates
chr2:251007014-251011385:+
Coord C1 exon
chr2:251007014-251007085
Coord A exon
chr2:251007938-251008054
Coord C2 exon
chr2:251011200-251011385
Length
117 bp
Sequences
Splice sites
3' ss Seq
CTGTTATTTATCTTTTACAGGAA
3' ss Score
11.65
5' ss Seq
CAGGTCATG
5' ss Score
3.35
Exon sequences
Seq C1 exon
GACCTTAAGAAGAAAGTACTTGAAAAGGAGACCTATATCCAAGAACTTTCATGTCTGTTTCATAATGAAAAG
Seq A exon
GAAAGTGCTTTGAAAGCAAACCGGTTTTCTCAGTCTGTCAAGGTAGTACACGATCGCCTACAGCTCCAAATTCAGAAGAGGGAGGTGGAGAATGAAAGGTTAAAAGAACACATACAG
Seq C2 exon
AGCTTGGAAACCCAAATAGCCAAGTGGAACTTGCAGGTAAAAATGAATAAGCAAGAGGCTGTGGCCGTCAAAGAAGCCAGCAGGCAGAAGGCTGAAGCTCTGAAGAAAGCGTCCAAAGTGTACAGACAGAGGCTGAGACACTTTACAGGGGACATCGAGCAGCTCACGTCCCAAATCAGAGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014059-'12-16,'12-15,13-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.042 A=0.000 C2=0.097
Domain overlap (PFAM):
C1:
NO
A:
PF104734=CENP-F_leu_zip=PU(25.0=64.1)
C2:
PF104734=CENP-F_leu_zip=FE(61.0=100),PF0003816=Filament=PU(42.5=82.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAAGTACTTGAAAAGGAGACCT
R:
TCTGATTTGGGACGTGAGCTG
Band lengths:
242-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]