BtaEX0025327 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012907 | ODF2L
Description
Bos taurus outer dense fiber of sperm tails 2-like (ODF2L), mRNA. [Source:RefSeq mRNA;Acc:NM_001075993]
Coordinates
chr3:57830917-57838298:+
Coord C1 exon
chr3:57830917-57830988
Coord A exon
chr3:57831524-57831640
Coord C2 exon
chr3:57838189-57838298
Length
117 bp
Sequences
Splice sites
3' ss Seq
TGTTTTGTTTTCTCTTATAGGCA
3' ss Score
12.18
5' ss Seq
AAGGTTATA
5' ss Score
1.81
Exon sequences
Seq C1 exon
AATCTTAAGAACAAGGTACTTGAAAAGGAGACCTATATCCAAGAACTTTCTTCTTTGTTTCAGAATGAAAAG
Seq A exon
GCAAATGCTTTGAAAGCAAGCCGTTTTTCACAATCAGTGAAAGTAGTACATGAACGACTGCAGTCCCAAATTCATAAAAAGGAAGCAGAGAATGAGAAATTAAAAGAACACATAAAG
Seq C2 exon
GAAGCCAAGTTGTCTGAAACAGTTTCAGCTTCCAATGCCTGGAAAAGTCATTATGAGAAAATAGTAATAGAGAAAACTGAGTTGGAAGTTCAGATCGAAACAATGAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012907_MULTIEX1-7/10=6-10
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.042 A=0.282 C2=0.054
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF115593=ADIP=PU(22.5=78.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTACTTGAAAAGGAGACCTATATCC
R:
TCATTGTTTCGATCTGAACTTCCA
Band lengths:
164-281
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development