GgaEX6044347 @ galGal3
Exon Skipping
Gene
ENSGALG00000006804 | ODF2L
Description
NA
Coordinates
chr8:16706673-16709876:+
Coord C1 exon
chr8:16706673-16706744
Coord A exon
chr8:16707688-16707804
Coord C2 exon
chr8:16709691-16709876
Length
117 bp
Sequences
Splice sites
3' ss Seq
TGTTTATTTCCCTTTCTTAGGTC
3' ss Score
11.25
5' ss Seq
CAGGTCAAC
5' ss Score
2.31
Exon sequences
Seq C1 exon
AGTCTCAGGAGAAAAATAGTAGAAAGAGAAGAACACATTAAAGAACTTTCATCCAGGATTCAGCTTAAAAAA
Seq A exon
GTCCCTGTACTGAAGGAAGAGTATCTATCAAGACCAGTAAACACAATTGAAGCTCATCTGCAGTATCAGATTCAAAGAAAAGAAGTGGAAAATGATGAATTAAGGCTGAAAACACAG
Seq C2 exon
ACTCTAGAGAAGAAAATAGCAGAGTGGAAACTTCAAATTGGTGAATACAAGCGTCAGATGTTGGCCTTGAAGAAAACAAGTGAGCAAAAAAAGGCTTATCTGAGAAGAGCAATTAGGTCCCAGAAACAAAAAACAGAATGCTTTGAAGAAGCTGTGGAAAATTTAACCTCCAGAGTAAAAGAACGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006804-'11-14,'11-13,12-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.208 A=0.000 C2=0.048
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF048997=MbeD_MobD=PU(18.8=19.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACATTAAAGAACTTTCATCCAGGA
R:
ACGTTCTTTTACTCTGGAGGTT
Band lengths:
226-343
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]