MmuEX6074541 @ mm9
Exon Skipping
Gene
ENSMUSG00000028256 | Odf2l
Description
outer dense fiber of sperm tails 2-like [Source:MGI Symbol;Acc:MGI:1098600]
Coordinates
chr3:144790974-144795781:+
Coord C1 exon
chr3:144790974-144791045
Coord A exon
chr3:144791854-144791970
Coord C2 exon
chr3:144795596-144795781
Length
117 bp
Sequences
Splice sites
3' ss Seq
CTGTTATTTTTCTTTTACAGGAA
3' ss Score
13.25
5' ss Seq
CAGGTTATA
5' ss Score
1.5
Exon sequences
Seq C1 exon
AACCTTGAGGAAAAAGTACTTGAAAAGGAGACCTATATCCGTGAACTCTCGTGTCTGTTTCAGAATGAAAAG
Seq A exon
GAAAGTGCTTTGAAAGCAAACAGGCTTTCTCAATCAGTCAAAGTAGTGCACGATCGTCTACAGCGCCAAATTCAGAAGAGGGAAGCTGAGAATGAAAAGCTAAAAGAACATGTACAG
Seq C2 exon
AGCTTGGAAACCCAAATAGCCAAGTGGAACTTGCAGGTGAAAATGAATAAGCAAGAGGCTGTAGCCATCAAGGAAGCAAGTCGGCAAAAGGCTGTAGCTCTGAAAAAAGCATCGAAAGTGTACAGACAAAGGCTGCGACACTTCACAGGGGATATCGAGCGCCTCGCCTCCCAAGTCAGAGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028256-'14-7,'14-6,16-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.052 A=0.112 C2=0.015
Domain overlap (PFAM):
C1:
PF039809=Nnf1=PU(0.1=0.0)
A:
PF039809=Nnf1=FE(84.4=100)
C2:
PF039809=Nnf1=PD(8.9=11.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAAAAGTACTTGAAAAGGAGACCT
R:
GATCTCTGACTTGGGAGGCGA
Band lengths:
248-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: