HsaINT0117845 @ hg38
Intron Retention
Gene
ENSG00000122417 | ODF2L
Description
outer dense fiber of sperm tails 2 like [Source:HGNC Symbol;Acc:HGNC:29225]
Coordinates
chr1:86382242-86383002:-
Coord C1 exon
chr1:86382931-86383002
Coord A exon
chr1:86382359-86382930
Coord C2 exon
chr1:86382242-86382358
Length
572 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
3' ss Seq
TCTCTTTCTCTTTGTTACAGGCA
3' ss Score
11.46
Exon sequences
Seq C1 exon
AATCTTAAGAAGAAGGTATTTGAAAAGGAGGCCCATATCCAAGAACTTTCTTGTTTGTTTCAGAGTGAAAAG
Seq A exon
GTAAGCAAAATTTGAGCTTTTGAGCTTAATTCATTATATTAATATTGACTCCCTTTTTTTTCCCATCCTGGCCCCAACTCCTCAGAAATAAACACAGAAAAGTGTTTTGAAATTCTAGATTATTTGGATATTTTACAGGTTTTACCTATCAAATATAACATCTTAATTTTATTAAGTTTTTTTAGGGTTTTTATGGTGTTTGTCAGGATACTTGGCATAAATCACTTCATATAGGAACTGTTTTAAATTTGTATTGTGTTTCAGTTGGGGAACAAATTAAGGAATTTTAGTGTTTGTAGGAGCATTTTAGGTATACCCATACCTTTATTTAGAAAGATAGATGGGAATTTTAAAAAAGAAAGCCATTAAATAAAAAATGTTGGGGGATAAAACTTAGCCCTGGTTGGGCATGAAATACATTTGTAATAGGGGCGGCAGTTTATGTAAAGTAGTGCTTTGCTTTTTATCAGCTGTTTAGATTGTGCCTAAATCAGGGTAAAATTAAAGATATTGGGCTGGGGATACAGCAAATAATATGGATTTTTTTGGTTTTCTCTTTCTCTTTGTTACAG
Seq C2 exon
GCAAATACTTTGAAAGCAAACCGTTTTTCCCAATCAGTAAAAGTAGTACATGAACGACTACAGATCCAAATTCATAAAAGGGAAGCCGAGAACGATAAGTTGAAAGAATATGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000122417:ENST00000359242:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.208 A=NA C2=0.002
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0003816=Filament=PU(0.3=2.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development