RnoINT0105070 @ rn6
Intron Retention
Gene
ENSRNOG00000014059 | Odf2l
Description
outer dense fiber of sperm tails 2-like [Source:RGD Symbol;Acc:1593831]
Coordinates
chr2:251007014-251008054:+
Coord C1 exon
chr2:251007014-251007085
Coord A exon
chr2:251007086-251007937
Coord C2 exon
chr2:251007938-251008054
Length
852 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
3' ss Seq
CTGTTATTTATCTTTTACAGGAA
3' ss Score
11.65
Exon sequences
Seq C1 exon
GACCTTAAGAAGAAAGTACTTGAAAAGGAGACCTATATCCAAGAACTTTCATGTCTGTTTCATAATGAAAAG
Seq A exon
GTAAACACATTTTGATCTTTTGTCCTTAAGTTATCATATTTTGTTAGCATTGGCTCCCTTTCCTTACTCCCTCTGTTTTCATGTCTTCAGTTATAGTAATAATAAGGACTTTATGACAGTTTTGGTCAGTATTAATTTACATGTATCAAATAGAACATCTTTCTAAGGTTCGTTGGTTTGTTTTGGGGGTGCGGTTTTGTTATTTAGTCCACTTAACATAAGTCACCAGGAATGCATACTTGTGGGTTGGGTGATGGGTCTGTCGGAGACCAGGATCTGAGGTGAGTTCCTAACACCCTGTGATTCTGGTCCTGGAAGGAGAGAGATGGGAAGATGACTGTGACTCACTGGCCAGTCAGACCGGTTTACTTCATAAGCTCCAAGCCAATAGGAGAGCCTATTTGAGAGGAGCTGGATGATGGTCCTGGGGATGACACCCAAGACTGTCGTGTGTGTGTATGTGTGTGTGTGCGTGCATGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGCATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGTGTGTCCTCAAACATGTACACAGCTGAAAATACTTATAGTTTATTTTTTGTCAAGATCAAGTAATTTTGGTGTTTGGAGGAAGAGTTTTAACATAACGTTTTACTTGAGAGGAGAAATAGGAAGACTTGTAGGAGATTATCAGAGGCATCGAATGAATGCAGTTTTTATGAAGTACATTGGTGAGGCATATGGAAAGGAGTGCTCTGTTTCCCCATGTGCTCAGGGTGAGTCTGACTGGGGTCTAACAAGGACAGGGAACACAGTAACTTGCTGTTATTTATCTTTTACAG
Seq C2 exon
GAAAGTGCTTTGAAAGCAAACCGGTTTTCTCAGTCTGTCAAGGTAGTACACGATCGCCTACAGCTCCAAATTCAGAAGAGGGAGGTGGAGAATGAAAGGTTAAAAGAACACATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014059:ENSRNOT00000018905:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.042 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF104734=CENP-F_leu_zip=PU(25.0=64.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]