BtaEX0025325 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012907 | ODF2L
Description
Bos taurus outer dense fiber of sperm tails 2-like (ODF2L), mRNA. [Source:RefSeq mRNA;Acc:NM_001075993]
Coordinates
chr3:57827950-57830988:+
Coord C1 exon
chr3:57827950-57828082
Coord A exon
chr3:57830730-57830789
Coord C2 exon
chr3:57830917-57830988
Length
60 bp
Sequences
Splice sites
3' ss Seq
ATAACTTCTTTTTTCCACAGAGA
3' ss Score
10.13
5' ss Seq
ATTGTAAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
CCTAAAGCAGGACATCCAAAATGAGAAGACCGAATTGGAAGCATTGTTTAAGGAAGCCGAGTTAGCAACTTGTTCTGCAGAATTACTTCTGCCATTGTTTAAGGACACCATTGAAGAGATTAGTTTTGAAAAT
Seq A exon
AGAGGGGAAAGTTTATCCAACTTGTTAGAGAAACTAACTGATAATGAAAGTGAAAACATT
Seq C2 exon
AATCTTAAGAACAAGGTACTTGAAAAGGAGACCTATATCCAAGAACTTTCTTCTTTGTTTCAGAATGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012907_MULTIEX1-5/10=4-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.044 A=0.250 C2=0.042
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGAAGACCGAATTGGAAGCA
R:
AGGTCTCCTTTTCAAGTACCTTGT
Band lengths:
146-206
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development