RnoEX0062095 @ rn6
Exon Skipping
Gene
ENSRNOG00000014059 | Odf2l
Description
outer dense fiber of sperm tails 2-like [Source:RGD Symbol;Acc:1593831]
Coordinates
chr2:251004813-251007085:+
Coord C1 exon
chr2:251004813-251004941
Coord A exon
chr2:251006837-251006896
Coord C2 exon
chr2:251007014-251007085
Length
60 bp
Sequences
Splice sites
3' ss Seq
GTTGGTGATCTTTCTTACAGACA
3' ss Score
7.68
5' ss Seq
AGAGTAAGC
5' ss Score
6.31
Exon sequences
Seq C1 exon
GCTAATCTTTCTGCATCCAATTTGAAGAAGATTTTTGAACAGAAGGACATATTATCAAAAGAATTAGACACTTTTAACCGTGTGAAATTAGCCTTAGAACATCTTATTAAACAGACAGACTATGAACAA
Seq A exon
ACAGGACCCCGTCCACCCTGCTTGTTGAAGGATCTCAGTGACAGTGACAGTGAGAACAGA
Seq C2 exon
GACCTTAAGAAGAAAGTACTTGAAAAGGAGACCTATATCCAAGAACTTTCATGTCTGTTTCATAATGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014059-'10-14,'10-12,11-14
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=0.633 C2=0.042
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAATTAGACACTTTTAACCGTGTGA
R:
TGAAACAGACATGAAAGTTCTTGGA
Band lengths:
132-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]