MmuEX6074543 @ mm10
Exon Skipping
Gene
ENSMUSG00000028256 | Odf2l
Description
outer dense fiber of sperm tails 2-like [Source:MGI Symbol;Acc:MGI:1098600]
Coordinates
chr3:145127023-145128081:+
Coord C1 exon
chr3:145127023-145127151
Coord A exon
chr3:145127831-145127890
Coord C2 exon
chr3:145128010-145128081
Length
60 bp
Sequences
Splice sites
3' ss Seq
TTCGATGATCTTTCTTACAGATA
3' ss Score
9.11
5' ss Seq
AGAGTAAGC
5' ss Score
6.31
Exon sequences
Seq C1 exon
GCTAATCTTTCTGCATCCAGTTTGAAGAAGATTTTTGAACAGAACGACATATTATCAAAAGAATTAGACACTTTTAACCGTGTGAAATTAGCCTTAGAACATCTTATTAAACAGACTGACTATGAACAA
Seq A exon
ATAGGAGACAGCTTGCTATGCTTGTTGAAGGATCTCAGTGACAATGAAAGTGAGAACAGA
Seq C2 exon
AACCTTGAGGAAAAAGTACTTGAAAAGGAGACCTATATCCGTGAACTCTCGTGTCTGTTTCAGAATGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028256-'19-10,'19-8,20-10
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.074 C2=0.068
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAATTAGACACTTTTAACCGTGTGA
R:
TGAAACAGACACGAGAGTTCACG
Band lengths:
132-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types