GgaEX6044348 @ galGal3
Exon Skipping
Gene
ENSGALG00000006804 | ODF2L
Description
NA
Coordinates
chr8:16704971-16706744:+
Coord C1 exon
chr8:16704971-16705105
Coord A exon
chr8:16706241-16706303
Coord C2 exon
chr8:16706673-16706744
Length
63 bp
Sequences
Splice sites
3' ss Seq
TTCCTGCTCTTGTCTTGCAGATA
3' ss Score
12.72
5' ss Seq
ACGGTAAGT
5' ss Score
11.81
Exon sequences
Seq C1 exon
CAGGTTTGTAAACCTTCTACATCAGAAATGATAATTATTGATACACAGGAGGATTTGCTGGTGAAAGAATTAACAACACTCAAAACCACCAAAAGATTGTTATGGCTTTTACTTCAAACAAGAGAACAGAAACAG
Seq A exon
ATAGACGGCAAAAACATTGAAGCTTTGATACAGAAGTTAAGTGAAAATGAAACCCACAATACG
Seq C2 exon
AGTCTCAGGAGAAAAATAGTAGAAAGAGAAGAACACATTAAAGAACTTTCATCCAGGATTCAGCTTAAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006804-'7-12,'7-11,10-12=AN
Average complexity
A_S
Mappability confidence:
90%=83=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.095 C2=0.208
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGAGGATTTGCTGGTGAAAGA
R:
TCCTGGATGAAAGTTCTTTAATGTGT
Band lengths:
148-211
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]