GgaEX6044348 @ galGal4
Exon Skipping
Gene
ENSGALG00000006804 | ODF2L
Description
outer dense fiber of sperm tails 2-like [Source:HGNC Symbol;Acc:HGNC:29225]
Coordinates
chr8:14936560-14938333:+
Coord C1 exon
chr8:14936560-14936694
Coord A exon
chr8:14937830-14937892
Coord C2 exon
chr8:14938262-14938333
Length
63 bp
Sequences
Splice sites
3' ss Seq
TTCCTGCTCTTGTCTTGCAGATA
3' ss Score
12.72
5' ss Seq
ACGGTAAGT
5' ss Score
11.81
Exon sequences
Seq C1 exon
CAGGTTTGTAAACCTTCTACATCAGAAATGATAATTATTGATACACAGGAGGATTTGCTGGTGAAAGAATTAACAACACTCAAAACCACCAAAAGATTGTTATGGCTTTTACTTCAAACAAGAGAACAGAAACAG
Seq A exon
ATAGACGGCAAAAACATTGAAGCTTTGATACAGAAGTTAAGTGAAAATGAAACCCACAATACG
Seq C2 exon
AGTCTCAGGAGAAAAATAGTAGAAAGAGAAGAACACATTAAAGAACTTTCATCCAGGATTCAGCTTAAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006804-'9-11,'9-9,12-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.022 A=0.095 C2=0.208
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGAGGATTTGCTGGTGAAAGA
R:
TCCTGGATGAAAGTTCTTTAATGTGT
Band lengths:
148-211
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]