MmuEX6074543 @ mm9
Exon Skipping
Gene
ENSMUSG00000028256 | Odf2l
Description
outer dense fiber of sperm tails 2-like [Source:MGI Symbol;Acc:MGI:1098600]
Coordinates
chr3:144789987-144791045:+
Coord C1 exon
chr3:144789987-144790115
Coord A exon
chr3:144790795-144790854
Coord C2 exon
chr3:144790974-144791045
Length
60 bp
Sequences
Splice sites
3' ss Seq
TTCGATGATCTTTCTTACAGATA
3' ss Score
9.11
5' ss Seq
AGAGTAAGC
5' ss Score
6.31
Exon sequences
Seq C1 exon
GCTAATCTTTCTGCATCCAGTTTGAAGAAGATTTTTGAACAGAACGACATATTATCAAAAGAATTAGACACTTTTAACCGTGTGAAATTAGCCTTAGAACATCTTATTAAACAGACTGACTATGAACAA
Seq A exon
ATAGGAGACAGCTTGCTATGCTTGTTGAAGGATCTCAGTGACAATGAAAGTGAGAACAGA
Seq C2 exon
AACCTTGAGGAAAAAGTACTTGAAAAGGAGACCTATATCCGTGAACTCTCGTGTCTGTTTCAGAATGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028256-'12-5,'12-4,13-5=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.056 C2=0.052
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF039809=Nnf1=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAATTAGACACTTTTAACCGTGTGA
R:
TGAAACAGACACGAGAGTTCACG
Band lengths:
132-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: