HsaINT0117842 @ hg38
Intron Retention
Gene
ENSG00000122417 | ODF2L
Description
outer dense fiber of sperm tails 2 like [Source:HGNC Symbol;Acc:HGNC:29225]
Coordinates
chr1:86384676-86385590:-
Coord C1 exon
chr1:86385458-86385590
Coord A exon
chr1:86384802-86385457
Coord C2 exon
chr1:86384676-86384801
Length
656 bp
Sequences
Splice sites
5' ss Seq
AATGTGAGT
5' ss Score
7.8
3' ss Seq
TGGTTCTTATAATTTGTCAGGCG
3' ss Score
4.03
Exon sequences
Seq C1 exon
CCTGAAGCAGGACATTCTAAATGAAAAGACTGAATTGGAAGCAACACTTAAGGAAGCGGAGTTGGTAACTCATTCTGTAGAATTGCTTTTGCCACTATTTAAGGACACCATTGAAAAGATTAATTTTGAAAAT
Seq A exon
GTGAGTGACTTATGAATATATAATAAAATGAAAAGCTAGTATAATACTCAGAATGCATTAACTGAGGTCTCATATCTTATATAGGTATGCTCACTTATGAGTATTTCATACCAAAAATGAGGGTTTATCAGAATTCTTTATTCCTGTGTCATTAACTACAGTTCTTTTCCTGAAAGATAATCTCAGCATACACCTGATAAGAGGCTAAGCTAGAAACAATATATTTTGGATGTTTGAATTACCCGGAGTTGAACTAGAAAATCAGCTTTTCTTAAGAGTGAATTTTAAACTAAAATCTTCTGAGAGATGAAATATATCTGTTTCTATAGTATTATTTGGAGTAGATAACTATTTTTAAATTTCAGCATATTAAAGTTTAAATTAGGGACAAACAGTAGATTATCTTCTATAACTTTTATTTGAATAAAAGCCTAAAATGCTTTTAGAATCTAAGCTCTTATTTTGATTTCATTTTATTTTAATGTACTGTATAACAGATCCAATTTACTATTGACAAATTTCGTAGCATTTATTATTACTATGCACAAAAGAATGATTTTGTTTAGTAGGAAAAAATATTGTTTGATAATATATTTTAGAGGGTTTTATTTAATGCTGTGTCTTAAAATGTGTATGTGGTTCTTATAATTTGTCAG
Seq C2 exon
GCGAATCTTTCTGCATTGAATTTGAAGATTTCTGAACAGAAGGAAATATTAATAAAAGAATTAGACACCTTCAAAAGTGTAAAACTAGCTTTAGAACATCTTCTTAGAAAGAGAGACTACAAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000122417:ENST00000359242:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAAGCAGGACATTCTAAATGAA
R:
AGTCTCTCTTTCTAAGAAGATGTTCT
Band lengths:
250-906
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development