RnoINT0105067 @ rn6
Intron Retention
Gene
ENSRNOG00000014059 | Odf2l
Description
outer dense fiber of sperm tails 2-like [Source:RGD Symbol;Acc:1593831]
Coordinates
chr2:251003875-251004941:+
Coord C1 exon
chr2:251003875-251004007
Coord A exon
chr2:251004008-251004812
Coord C2 exon
chr2:251004813-251004941
Length
805 bp
Sequences
Splice sites
5' ss Seq
CATGTGAGT
5' ss Score
7.83
3' ss Seq
TGCTTCTTTTATTTTGTCAGGCT
3' ss Score
6.52
Exon sequences
Seq C1 exon
GTTCAAGGGAGACGTCTCAAGTACCAAGACGGAGTTGGAAGCAGCGCTTAGGGAAGCTGAATTGGCATCCTGCTCAGTAGAGTTACTTTTGCCATTGCTTAAGAACACTGTGGAAGGAATTGGTTTAGAACAT
Seq A exon
GTGAGTGTTGGGCTTAGAATGGCTGATGAGATTGAAAGTCAGCATAATATTCAGAGTGCCTTGACCAAGGACTCAAATATCAAAGCAATGCCATGTATAGGTAGCTGATACCAAACATAGGGGTGGGGTAAGAATTCTTTATTCCTGTCATTAACTGCAGTTCTTTTCCAAAAAGATAGACTCAGCCTGTAGTACACCTAGTAAGAGACTAGACTGAAAACTACAGGTTGATGTATGACTCATCTGGTCTTGAACTAGAGAATGACACTTTCAGAAAAGTGGATTTAAGACTAAAATTGTGGTCTGGAGAGACGGTTCAGTGATCGAAGTCTTCCAGAAGACCATCTCTAACTCCAATTGCAGAAGAAATGATTCCCCCTTGTGGCTTCTCAGTGCATAGACTTGCAGGCAAAACACTCATTCACACAAAATAGTAATAAATCTTTTAAAAGTAAACTCCCTGAGAGAGATGCCCTAGGTCTGTTTTCTGTGGCATCATTTGGGACAGAATGATTTTACAATTTCAAATAAGCTTCACTCTGGAACAAGACCAGCCTGTGCTCTGCACATCAGCAGAACAAATCCAGCAAAGCCGTGGGCTCCTGCAGCCTCCTTTCGTTATAACTTAACTGCCTCGCAGTGCAGTGCGTTCTGTCTACTATTGGTAAACTTGCCAGGGCTTACCAATACTGTGTGCAAAGTAACGATTTAGATAGTAGGAAATGCTTCCTCATTGATAATATCCGAGGGTGTTTTACGTTATGTCGTCTTAACGTGTAGATATGTGCTTCTTTTATTTTGTCAG
Seq C2 exon
GCTAATCTTTCTGCATCCAATTTGAAGAAGATTTTTGAACAGAAGGACATATTATCAAAAGAATTAGACACTTTTAACCGTGTGAAATTAGCCTTAGAACATCTTATTAAACAGACAGACTATGAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014059:ENSRNOT00000018905:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.052 A=NA C2=0.023
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCAAGGGAGACGTCTCAAGT
R:
AAGATGTTCTAAGGCTAATTTCACAC
Band lengths:
238-1043
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]