GgaINT0038665 @ galGal3
Intron Retention
Gene
ENSGALG00000006804 | ODF2L
Description
NA
Coordinates
chr8:16703997-16705105:+
Coord C1 exon
chr8:16703997-16704120
Coord A exon
chr8:16704121-16704970
Coord C2 exon
chr8:16704971-16705105
Length
850 bp
Sequences
Splice sites
5' ss Seq
AATGTAAGT
5' ss Score
8.62
3' ss Seq
TTTTGGTTACAATCTTTTAGCAG
3' ss Score
4.58
Exon sequences
Seq C1 exon
GGAGGAGGAAAATGCCTCTCATGAAAATGGTGCTTCACAGGAGATTTTTGAAGCAGAAATGGCAATTAATTCAGCAGAGAACTTGTTGCCAACTTTTAAAGACATACTTGGCAGAATGACAAAT
Seq A exon
GTAAGTACATTGTAGTCAAAACTTCATACACATACTGGATTCAAGATTAATTATTATTGTCTAAATTTATTGTCTCTGTCCATGTCTATGGGTGGTTTTTGAAATTTAGGTCTTACATTTCTGATCTCTGCAAATGCTTGTCCCACTTCTAAATCCCTTCTGCACAGGATGCACAAAGAGTTCTTGAAAGAGCAGAGAGGTGTGAATTTTCCTACTTTAACCTTTGACAGACATATACATAAACCTTATTTAGATGCATTTCTTAATGCCTGCATGCCATTGTTTTTAACGAAAAAAAAAGACTGACAAGTCACAAGTCAGTGCTGCCTGACTATAATTTGGAGGGAGGTTTTCGTGTTTTTTAAATAATTTATCAATTTAAACTGTCATCCCAGTGTCTCATTTGATCTTTTCTCCAAGAACATTAACACAAACTTTTTCCATACTTATATTATATGCAGGTGAGCATAAGATGACTTCTTTGCAAGGAGTTCTGGGAAACCTTTTGATTGCAAAGTTACCGCTTCCTTTTGTCGTTGTTGGTTTTTTTGCTTGTTTGTTTTTTTCCTTTCTTTATTATTTATTTATTCTAATTCCATTCGGACTACTTATCAGGAAGAGCTATTAAAGATACCTTATTTCTGTTTGAGTAGAAGAGAAAGCTCTGTGTTTCTCATACTGTTTAAAGATTACTTCAGCAACGTTTTTCCTTTTGCTATTTTACTTTTAAACGTTGCAAACATTCATTTATTTTTACTGTCTGCGTTCGAAAGCAATATGTAAATATTAGTAACAAACGTTTGAGGGGGAGTTGTGGATCGTGTATAATCTTTTGGTTACAATCTTTTAG
Seq C2 exon
CAGGTTTGTAAACCTTCTACATCAGAAATGATAATTATTGATACACAGGAGGATTTGCTGGTGAAAGAATTAACAACACTCAAAACCACCAAAAGATTGTTATGGCTTTTACTTCAAACAAGAGAACAGAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006804:ENSGALT00000038838:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAAAATGCCTCTCATGAAAATGG
R:
CTGTTTCTGTTCTCTTGTTTGAAGT
Band lengths:
254-1104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]