HsaINT1025580 @ hg38
Intron Retention
Gene
ENSG00000122417 | ODF2L
Description
outer dense fiber of sperm tails 2 like [Source:HGNC Symbol;Acc:HGNC:29225]
Coordinates
chr1:86385458-86387079:-
Coord C1 exon
chr1:86386915-86387079
Coord A exon
chr1:86385591-86386914
Coord C2 exon
chr1:86385458-86385590
Length
1324 bp
Sequences
Splice sites
5' ss Seq
CTGGTATTC
5' ss Score
1.5
3' ss Seq
GTATGTGCATTTGTAATTAGCCT
3' ss Score
3.03
Exon sequences
Seq C1 exon
CTTATGTGGAGAAGTCGCTGTGAAGCCACCTATAAATCCATTTACTGAATTTATGGAGAAGGCTGTAAATGATGGAAGTCATTCAGAAGAACTCTTTTGCCATCTTAAAACTATATCAGAGAAAGAAGATTTACCACGGTGTACCAGTGAAAGTCATCTCAGCTG
Seq A exon
GTATTCTCATCAGTATCAGGGGAAATCTAAATTTCCGATTCTAGGATTTCCTGTTTTGTCTATAATATAAATTATTTGAATCAAATACAGCATTCTTTTAAGAGTATCTTTTCCAAATCTAGTATTTATTTATTAAAATATATTTAATCTGATTACAAGTGTACTCATCTAGCAGAATTCAACTAGTTTTTTTGAATCTTAATGAAAGCAATTAAAAATGAAAACCTGGCCGGGCGCAATGGATCATGCCTGTAATCCCAGCACTTTGGGAGGATGAGGCAGGTGGATCACTTGAGGTCAGGAGTTCAAGATCAGCCTGGCCAACATGGTGAAACCCCATCTCTACTGAAAAAATGCAAAAATTAGCCAGATGTGGTAGCGTGTGCCTGTTGTCCCAGCTACTTGGAAGGCTGTGGTAGAAGAATCACTTGAACCTGGGAGGCGAAGGTCACAGTGAGCCGAGATAATGCCACTGCACTCCTGGGTGACAGAGCCTGGGTGACAGAGCGAGACTCCATCTCAAAAAAGAAAAAGACAAAAAAAATGAAAACCTCATCTGTTAAGAATTTGTAAAATAAAGCTATTTAAGATAAATGAAAATATAATATGTGATATCAGAAATGTAGTTAATGAATGTGAAATCACTGTCATTTGGTATATTACTATATAGCAAATACTTGTCATACTTCTTTAGAGTGGGGAATACACTTGTTATTTACATGAAATATTGCCCCCCGTCAAATGGCAATCTTAGTATATACCATTACTGTCAGTATGGATAGCTTAGTCCAGCTTCTGGTTGAATTTGTTATGAATGAAAATAATATTTTATCATCTATAATCACACTTGACTTTCTGCCCATGGTTTTTAATAAGGGACAGGTGTCGTTTATAGATAGAATGTTCTTAGGCTCATTACTTTAAGCCAGTTGTGCTTAAGAACACACAGATTTTTGACATAGCCTCTAAGATGCCATCAGTTGTTAATGAGCCGTTATGTTTTACAAAGAAAGAGAAAAGCTGCCAATTAAAGAGTTTCCATATCACTTGGAATTTTATTTATAAATATTGAAAATGCTCCTTCAAACTTAACTATACGTACATCTTTAATCCAAATAACTTTTGTGATTACGTACAAGTAAAATATAAGTAAAATAAAGTATTCTTAAAATTTGCTTACACTCAAAGTCCAAGTTTCGAGCTACTTTTGAACTAAAAGTTGTCCTTGCTATTAAGAGTACTGTATAGGTGATATGGCATTTCTGAGGAGCATCTTTAAATGAAATGGATTTAACTTAAATTTTGTATGTGCATTTGTAATTAG
Seq C2 exon
CCTGAAGCAGGACATTCTAAATGAAAAGACTGAATTGGAAGCAACACTTAAGGAAGCGGAGTTGGTAACTCATTCTGTAGAATTGCTTTTGCCACTATTTAAGGACACCATTGAAAAGATTAATTTTGAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000122417:ENST00000359242:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.105 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTATGTGGAGAAGTCGCTGTGA
R:
TCAATGGTGTCCTTAAATAGTGGCA
Band lengths:
278-1602
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains