RnoINT0105066 @ rn6
Intron Retention
Gene
ENSRNOG00000014059 | Odf2l
Description
outer dense fiber of sperm tails 2-like [Source:RGD Symbol;Acc:1593831]
Coordinates
chr2:251002212-251004007:+
Coord C1 exon
chr2:251002212-251002374
Coord A exon
chr2:251002375-251003874
Coord C2 exon
chr2:251003875-251004007
Length
1500 bp
Sequences
Splice sites
5' ss Seq
CAGGTATCC
5' ss Score
7.91
3' ss Seq
GCTTATCTGTCTGTTATCAGGTT
3' ss Score
9.64
Exon sequences
Seq C1 exon
CTTTCAGCGTCTGTGGGAAGCTGTTGCTGAAGCGCTGTAAGAGAGTGGCGGAGTTGATGGAGAAGCCTACTAGTGATGGAAGTCATTCAGAGGGCCTGTTGTCCTACCTCTTACAGGAGAGAGGACCTGACCTACTATGTGCCCCTGAGAAGCACCGCAGCAG
Seq A exon
GTATCCTCCGTATTGGCGGAACAAATCTCATCTGTTTTCTTAAGTAAATGTGGTAATCAATCACAAATATCCTGTCACATTTAGTGTTTATTCATTAAAATATACCTACACAATCTGATTATAAAGATTCTTATTCAGCAGTTATAGAGCAGTTGTCAGTCTTTATTATGTTTGTTGGCTTTACTTTTGAGACAGGGCCTCACAAGCAGCGCAGGCTGTTCCCAGACTCTCAGGCTACTTGCCTCAGCCTTCTGTGCTCCGTGATTACAGGTGTGTTGTTTAAGGGTTTTTTTATTTGTAATGAAGGGAACTGAAAAATCAACTCAACCTATTAATAGAATGAATATTATTGTAAGGTGAATATTATTGCTGGTATATTGTTGTATAACAAATGATTATCATATTTTGCTTCTTTTAAATGGGAAATTTACTTGTTATTTTTATGGATTAATATTCCCCACAGTAGTAATCTTAAAAATTATTAAATCTTAAATCATTATTGTTATCATAGGTCGTATAGACTAGCTTTTAGTTTAGTTTGCAGAAAATGGAAAATGGTGTTTCATCAAATATAATTGTTAATTTTTGAGCGCTTGGTTTTGAGTAAATGACGCTTATTTATCATAAGCTTTTTACTTTAAGCCAGTGGTGCTTACGGACAGAGTCTTCTCTTTGAAGTGCTGTAAGATTCCAAATGTGTGCGTTTATGTGCACATGTGAGATTTGTGCTGTGGAGGTCAGAGGACAGCTTTCAGAGTCTGTTCTGTCTTTCTACCATGTGAGTCCCAGAGTGTGAACAGGTCTGTAGTCATGGCAGCCATGCCTTTACCTGGGAGCCGTCTTCCCAGCCCATCAGTCCGAAATGAGTTTTTATAAGAATTCCATTAGGACAGAAACAGTACTGAGTAATGAAAGGCATGGTGCTCTCACAGCAATTGCTGTTTGTTTTTGTAATTGAAAAAGCTGCTTTCAAATTTAGTTATACATAGATTTTTATTTATTAAAGTGTTTAAATATATATATTTGTTAAAAATTTAAAGATATATTTAAGTATATGTGAATTTTGCCTCCATATATTTGTGCGCACCACATGCATACTTAGTGCGCATGGAGGCCAAAAGAGGGTATATGAGTTCCCCCAGAACTGGAGTTACAGACAGTTGTGAGCTACCTTCTGGGTGCTGGCACTAGAACCTGGGTCCTCTGAAGAGCACTAGTGCTGAGCCATCTCTCCAACCCTATACACAATGTACATAACTTGTGATTCCATAACAGCAAAATGTAAGATGAATCATTCACTTACCTGTACTCCAGGTCTCCCTCTTGACCTCTTTCCACCCATGTTTGGCTTGGATACTTATAATTCTGGTGGTAAGGCCTCCCCTAGGGATCGAAGTCAAATTCATGTCAGTCCAGAGGCAGGCCTGACTTGTTATCGTACATGAGATGTCTCCAGTTTGTGTGTTAGATGTAACTTACAGCTTATCTGTCTGTTATCAG
Seq C2 exon
GTTCAAGGGAGACGTCTCAAGTACCAAGACGGAGTTGGAAGCAGCGCTTAGGGAAGCTGAATTGGCATCCTGCTCAGTAGAGTTACTTTTGCCATTGCTTAAGAACACTGTGGAAGGAATTGGTTTAGAACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014059:ENSRNOT00000018905:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.357 A=NA C2=0.052
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTCAGCGTCTGTGGGAAGC
R:
TGTTCTAAACCAATTCCTTCCACAGT
Band lengths:
295-1795
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]