RnoEX0062107 @ rn6
Exon Skipping
Gene
ENSRNOG00000014059 | Odf2l
Description
outer dense fiber of sperm tails 2-like [Source:RGD Symbol;Acc:1593831]
Coordinates
chr2:250995517-251006896:+
Coord C1 exon
chr2:250995517-250995682
Coord A exon
chr2:251004813-251004941
Coord C2 exon
chr2:251006837-251006896
Length
129 bp
Sequences
Splice sites
3' ss Seq
TGCTTCTTTTATTTTGTCAGGCT
3' ss Score
6.52
5' ss Seq
CAAGTAAGG
5' ss Score
7.66
Exon sequences
Seq C1 exon
CTCCTGGGTAGATGCAGTCTGTCCGCCGCTGCCTGTTCTGGTGACTCCTCGACTTCTCGTCCCGCGGTCCCTGCCTTTCCTTCTGGCCATCTTCTCTTCCTTCTGCGCTCTCCGCCTGCCGAGGCGACCCTGGGCCGGGCAGACCTTAGAGAGCCCTACAGCCATT
Seq A exon
GCTAATCTTTCTGCATCCAATTTGAAGAAGATTTTTGAACAGAAGGACATATTATCAAAAGAATTAGACACTTTTAACCGTGTGAAATTAGCCTTAGAACATCTTATTAAACAGACAGACTATGAACAA
Seq C2 exon
ACAGGACCCCGTCCACCCTGCTTGTTGAAGGATCTCAGTGACAGTGACAGTGAGAACAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014059_MULTIEX1-4/4=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.023 C2=0.633
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTGGGTAGATGCAGTCTGT
R:
TCTGTTCTCACTGTCACTGTCAC
Band lengths:
226-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]