RnoALTD0020902-2/3 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000014059 | Odf2l
Description
outer dense fiber of sperm tails 2-like [Source:RGD Symbol;Acc:1593831]
Coordinates
chr2:250995582-251002374:+
Coord C1 exon
chr2:250995582-250995682
Coord A exon
chr2:250995683-250995686
Coord C2 exon
chr2:251002212-251002374
Length
4 bp
Sequences
Splice sites
5' ss Seq
TAGGTAGTG
5' ss Score
3.11
3' ss Seq
GAATAACACACGTCTCCTAGCTT
3' ss Score
0.6
Exon sequences
Seq C1 exon
GGTCCCTGCCTTTCCTTCTGGCCATCTTCTCTTCCTTCTGCGCTCTCCGCCTGCCGAGGCGACCCTGGGCCGGGCAGACCTTAGAGAGCCCTACAGCCATT
Seq A exon
GTAG
Seq C2 exon
CTTTCAGCGTCTGTGGGAAGCTGTTGCTGAAGCGCTGTAAGAGAGTGGCGGAGTTGATGGAGAAGCCTACTAGTGATGGAAGTCATTCAGAGGGCCTGTTGTCCTACCTCTTACAGGAGAGAGGACCTGACCTACTATGTGCCCCTGAGAAGCACCGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014059-0-3,1-3,2-3-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.357
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAGACCTTAGAGAGCCCTA
R:
CTTCTCCATCAACTCCGCCAC
Band lengths:
94-98
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]