RnoEX0062105 @ rn6
Exon Skipping
Gene
ENSRNOG00000014059 | Odf2l
Description
outer dense fiber of sperm tails 2-like [Source:RGD Symbol;Acc:1593831]
Coordinates
chr2:251002212-251004007:+
Coord C1 exon
chr2:251002212-251002374
Coord A exon
chr2:251002570-251002644
Coord C2 exon
chr2:251003875-251004007
Length
75 bp
Sequences
Splice sites
3' ss Seq
TGGCTTTACTTTTGAGACAGGGC
3' ss Score
1.23
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
CTTTCAGCGTCTGTGGGAAGCTGTTGCTGAAGCGCTGTAAGAGAGTGGCGGAGTTGATGGAGAAGCCTACTAGTGATGGAAGTCATTCAGAGGGCCTGTTGTCCTACCTCTTACAGGAGAGAGGACCTGACCTACTATGTGCCCCTGAGAAGCACCGCAGCAG
Seq A exon
GGCCTCACAAGCAGCGCAGGCTGTTCCCAGACTCTCAGGCTACTTGCCTCAGCCTTCTGTGCTCCGTGATTACAG
Seq C2 exon
GTTCAAGGGAGACGTCTCAAGTACCAAGACGGAGTTGGAAGCAGCGCTTAGGGAAGCTGAATTGGCATCCTGCTCAGTAGAGTTACTTTTGCCATTGCTTAAGAACACTGTGGAAGGAATTGGTTTAGAACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014059_MULTIEX1-2/4=1-3
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.357 A=0.192 C2=0.052
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000018905fB10052
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCGCTGTAAGAGAGTGGC
R:
CTGCTTCCAACTCCGTCTTGG
Band lengths:
179-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]