GgaEX7006864 @ galGal4
Exon Skipping
Gene
ENSGALG00000006804 | ODF2L
Description
outer dense fiber of sperm tails 2-like [Source:HGNC Symbol;Acc:HGNC:29225]
Coordinates
chr8:14935586-14937892:+
Coord C1 exon
chr8:14935586-14935709
Coord A exon
chr8:14936560-14936694
Coord C2 exon
chr8:14937830-14937892
Length
135 bp
Sequences
Splice sites
3' ss Seq
TTTTGGTTACAATCTTTTAGCAG
3' ss Score
4.58
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GGAGGAGGAAAATGCCTCTCATGAAAATGGTGCTTCACAGGAGATTTTTGAAGCAGAAATGGCAATTAATTCAGCAGAGAACTTGTTGCCAACTTTTAAAGACATACTTGGCAGAATGACAAAT
Seq A exon
CAGGTTTGTAAACCTTCTACATCAGAAATGATAATTATTGATACACAGGAGGATTTGCTGGTGAAAGAATTAACAACACTCAAAACCACCAAAAGATTGTTATGGCTTTTACTTCAAACAAGAGAACAGAAACAG
Seq C2 exon
ATAGACGGCAAAAACATTGAAGCTTTGATACAGAAGTTAAGTGAAAATGAAACCCACAATACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006804-'8-9,'8-6,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.476 A=0.022 C2=0.095
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATGCCTCTCATGAAAATGGTGC
R:
CGTATTGTGGGTTTCATTTTCACT
Band lengths:
178-313
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]