RnoEX0062102 @ rn6
Exon Skipping
Gene
ENSRNOG00000014059 | Odf2l
Description
outer dense fiber of sperm tails 2-like [Source:RGD Symbol;Acc:1593831]
Coordinates
chr2:250996127-251004007:+
Coord C1 exon
chr2:250996127-250996227
Coord A exon
chr2:251002212-251002374
Coord C2 exon
chr2:251003875-251004007
Length
163 bp
Sequences
Splice sites
3' ss Seq
GAATAACACACGTCTCCTAGCTT
3' ss Score
0.6
5' ss Seq
CAGGTATCC
5' ss Score
7.91
Exon sequences
Seq C1 exon
GGGTGTCAAGTGTTTGAGGATAAGAGTGCCTGGTTTAGGTAAAGGATCAAACTGTAGAAATCGTGCCTGCTTTTAAGCTTTACTTCATACCTTTGATTATG
Seq A exon
CTTTCAGCGTCTGTGGGAAGCTGTTGCTGAAGCGCTGTAAGAGAGTGGCGGAGTTGATGGAGAAGCCTACTAGTGATGGAAGTCATTCAGAGGGCCTGTTGTCCTACCTCTTACAGGAGAGAGGACCTGACCTACTATGTGCCCCTGAGAAGCACCGCAGCAG
Seq C2 exon
GTTCAAGGGAGACGTCTCAAGTACCAAGACGGAGTTGGAAGCAGCGCTTAGGGAAGCTGAATTGGCATCCTGCTCAGTAGAGTTACTTTTGCCATTGCTTAAGAACACTGTGGAAGGAATTGGTTTAGAACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014059-'3-9,'3-3,7-9
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.357 C2=0.052
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTGTCAAGTGTTTGAGGAT
R:
ATGTTCTAAACCAATTCCTTCCACA
Band lengths:
234-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]