BtaEX0025324 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012907 | ODF2L
Description
Bos taurus outer dense fiber of sperm tails 2-like (ODF2L), mRNA. [Source:RefSeq mRNA;Acc:NM_001075993]
Coordinates
chr3:57817816-57828082:+
Coord C1 exon
chr3:57817816-57817899
Coord A exon
chr3:57825946-57826114
Coord C2 exon
chr3:57827950-57828082
Length
169 bp
Sequences
Splice sites
3' ss Seq
ATAATGAAAATATTTCCTAGGTT
3' ss Score
4.69
5' ss Seq
CTGGTATTC
5' ss Score
1.5
Exon sequences
Seq C1 exon
GGAAAATTTGGGCTTGGGCGGCGGAGGGTCGGTTACCGCGGGTGGCTTTAAGGGTCCCGGGTTGGGGCCGTGGCCGTGGCCTTG
Seq A exon
GTTTCAGCTTATGTGGAGAACTTGCTGTGGAAGCCACCGATAAATCCATTTAATTTATGGAGGAGACTGCAAATGATGGAAGTCATTCAGAAGAACTCTTTTCCCATTTTGAAAGTAGATCAGAGAAAGAAGGTTTACCACAGGATGCCAGTGAAAGTCATCTCAGCTG
Seq C2 exon
CCTAAAGCAGGACATCCAAAATGAGAAGACCGAATTGGAAGCATTGTTTAAGGAAGCCGAGTTAGCAACTTGTTCTGCAGAATTACTTCTGCCATTGTTTAAGGACACCATTGAAGAGATTAGTTTTGAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012907_MULTIEX1-3/10=C1-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.947 C2=0.044
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAAATTTGGGCTTGGGCG
R:
AAACTAATCTCTTCAATGGTGTCCT
Band lengths:
210-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development