GgaALTA1022629-3/3 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000006804 | ODF2L
Description
outer dense fiber of sperm tails 2-like [Source:HGNC Symbol;Acc:HGNC:29225]
Coordinates
chr8:14935586-14936694:+
Coord C1 exon
chr8:14935586-14935709
Coord A exon
chr8:14936560-14936607
Coord C2 exon
chr8:14936608-14936694
Length
48 bp
Sequences
Splice sites
5' ss Seq
AATGTAAGT
5' ss Score
8.62
3' ss Seq
TTTTGGTTACAATCTTTTAGCAG
3' ss Score
4.58
Exon sequences
Seq C1 exon
GGAGGAGGAAAATGCCTCTCATGAAAATGGTGCTTCACAGGAGATTTTTGAAGCAGAAATGGCAATTAATTCAGCAGAGAACTTGTTGCCAACTTTTAAAGACATACTTGGCAGAATGACAAAT
Seq A exon
CAGGTTTGTAAACCTTCTACATCAGAAATGATAATTATTGATACACAG
Seq C2 exon
GAGGATTTGCTGGTGAAAGAATTAACAACACTCAAAACCACCAAAAGATTGTTATGGCTTTTACTTCAAACAAGAGAACAGAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006804-8-8,8-7,8-6-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.476 A=NA C2=0.022
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCTCTCATGAAAATGGTGCT
R:
AGTGTTGTTAATTCTTTCACCAGCA
Band lengths:
144-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]