BtaEX6017974 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015647 | CYP4X1
Description
cytochrome P450, family 4, subfamily X, polypeptide 1 [Source:HGNC Symbol;Acc:HGNC:20244]
Coordinates
chr3:99687251-99690662:-
Coord C1 exon
chr3:99690535-99690662
Coord A exon
chr3:99687491-99687618
Coord C2 exon
chr3:99687251-99687405
Length
128 bp
Sequences
Splice sites
3' ss Seq
ATCTTGACCTCCTGTGCCAGAAT
3' ss Score
5.15
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
GAAAAGGACTAGTGAATTTGAGTGGACCCAAATGGTCTCAGCACCGTCGTCTACTAACTCCTGGATTCCATTTTAATACCTTGAAATCGTTTGTCGAGGTGATGGCTCAATCTGTGAACATCATGCTG
Seq A exon
AATAAGTGGGAGAAGATTTGTGGCTCTCAGAATACACTTCTGGATATCTATGAGCACATCAACTTGATGACCCTGGACGTACTCATGAAATGTATTTTCAGCTGGGAAACCAACTGCCAAACAGACAG
Seq C2 exon
CTCCCATGATAATTATGTAAAAGCAACAAGTGAAGGCAGCAATATCCTTATGCAACGCCTGTTCAATTACTTTTATCACTATGACCTAATTTTCAAATTAAGTCCTCTGGGCCACCGCCTGCGGGAGGTAAACAAGATATTGCATCATCATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015647-'3-4,'3-3,4-4=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.038
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(9.6=100)
A:
PF0006717=p450=FE(9.6=100)
C2:
PF0006717=p450=FE(11.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAATGGTCTCAGCACCGTC
R:
GCAATATCTTGTTTACCTCCCGC
Band lengths:
244-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]