MmuEX6095184 @ mm10
Exon Skipping
Gene
ENSMUSG00000047155 | Cyp4x1
Description
cytochrome P450, family 4, subfamily x, polypeptide 1 [Source:MGI Symbol;Acc:MGI:1932403]
Coordinates
chr4:115121625-115124468:-
Coord C1 exon
chr4:115124341-115124468
Coord A exon
chr4:115121857-115121984
Coord C2 exon
chr4:115121625-115121779
Length
128 bp
Sequences
Splice sites
3' ss Seq
ATCTTGGCCTCCTCTGGCAGGAT
3' ss Score
7.76
5' ss Seq
CGGGTCAGT
5' ss Score
6.55
Exon sequences
Seq C1 exon
GACGAGGACTCCTGAATTTAGATGGGCCCAGGTGGTTCCAACACCGCTGCCTCCTAACTCCTGCATTCCATCAGGACATCCTAAAACCATGTGTGGACACGATGGCCCACTCTGTGAAAGTGATGCTG
Seq A exon
GATAAATGGGAGAAGATGTGGACCACTCAGGAAACAACCATCGAGGTTTTTGAACACATCAACTTGATGACCCTGGACATAATAATGAAATGTGCTTTTGGCCAGGAGACCAACTGCCAGATAAACGG
Seq C2 exon
CACCTATGAGTCTTACGTGAAGGCAACATTTGAACTTGGTGAAATCATATCTTCTCGCTTGTACAATTTCTGGCATCATCATGACATAATTTTCAAACTCAGTCCTAAGGGCCACTGCTTCCAGGAGTTAGGCAAAGTGATACATCAATACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047155-'3-5,'3-4,4-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.5=100)
A:
PF0006717=p450=FE(13.5=100)
C2:
PF0006717=p450=FE(11.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTAGATGGGCCCAGGTGGT
R:
TGCCTAACTCCTGGAAGCAGT
Band lengths:
247-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types