BtaEX6018990 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021023 | ZMYM4
Description
zinc finger, MYM-type 4 [Source:HGNC Symbol;Acc:HGNC:13055]
Coordinates
chr3:110978432-110985979:-
Coord C1 exon
chr3:110985809-110985979
Coord A exon
chr3:110978925-110979009
Coord C2 exon
chr3:110978432-110978687
Length
85 bp
Sequences
Splice sites
3' ss Seq
TATTTTTCTTTTTTAAAAAGGAG
3' ss Score
6.24
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
Exon sequences
Seq C1 exon
GATTCCAGCTATCCATTTGCCAATAAAGAATCCATTGGTTCGGAACTGGGAAATTCCTTTGCATCAAATATTAGAATTAAAGAAGAACCTTTGGATGATGAGTATGACAAAGCAATGGCACCACAGCAGGGACTACTAGACAGAATTAAAGATGAACCTGACAATGCTCAA
Seq A exon
GAGTATAGTCATGGCCAACAGCAAAAAACTCAAGAGGGGGAACTGAAAATTAGCGCTGTGTTTTCAGTCAGTGGCAGTCCTCTTG
Seq C2 exon
CTCCACAGTTGACTACTGGCTTTCAGCCTTCACTGGCGTCATCTGGCATGAATAAAATGCTTCCTTCAGTTCCAGCCACAGCTGTTCGAGTTTCCTGTTCTGGTTGTAAAAAAATCCTCCAGAAGGGGCAAACTGCTTATCAGAGGAAAGGGTCTACGCAGCTGTTCTGCTCTACATTGTGCCTCACTGGATATACAGTTCCACCTGCCCGCCCACCGCCTCCTCCCACTAAGAAAACTTGCTCAAGTTGCTCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021023-'5-9,'5-8,7-9=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.719 A=0.586 C2=0.279
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF064679=zf-FCS=WD(100=47.7),PF064679=zf-FCS=PU(28.9=15.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACAAAGCAATGGCACCACA
R:
AGAACAGGAAACTCGAACAGCTG
Band lengths:
168-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]