GgaEX1000564 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr23:4687633-4691434:-
Coord C1 exon
chr23:4691264-4691434
Coord A exon
chr23:4688338-4688416
Coord C2 exon
chr23:4687633-4687885
Length
79 bp
Sequences
Splice sites
3' ss Seq
TTCCTTTCCTTTTGTTTTAGGAG
3' ss Score
11.63
5' ss Seq
TTGGTAAGG
5' ss Score
8.92
Exon sequences
Seq C1 exon
GAGTCTAGCTACCTATTTTCTAGTAAGGAATCTATTGGACAAGAGCTGGGGAATTCCTTTGCACCAAATATTAGAATTAAGGAGGAGCCTTTGGATGACGAATATGATAAAGCTATGGCCCCACAGCAGGGACTATTAGACAAAATTAAAGATGAACCTGATAATTCTGAG
Seq A exon
GAGTACGGCCAACAGCCAAAAACTCAGGAAGGGGAGCTGAAAATCAGTGCTGTGTTTTCAGTCAGTGGCAGTCCTCTTG
Seq C2 exon
CTCCACAGCTGTCATCAGGTTTCCAGCCTGCTGTGGCATCCTCTGGCATGAGTAAAATGCTTCCTTCAGTTCCAGGCACAGCTGTTCGGGTTTCCTGTTCTGGCTGTAAAAAAATCCTCCAGAAGGGGCAGACCGCATACCAGAGGAAAGGCTCTACCCAGCTCTTCTGCTCCACACTGTGCCTCACTGGATACACCGTTCCAGCTTGTCGCCCACCAGCTTCCACCAAGAAAACCTGCTCAAGCTGCTCGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002499-'4-7,'4-6,8-7=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.807 A=0.444 C2=0.106
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF064679=zf-FCS=WD(100=48.2),PF064679=zf-FCS=PU(28.9=15.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTGGGGAATTCCTTTGCA
R:
TACTCATGCCAGAGGATGCCA
Band lengths:
183-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]