BtaEX6022175 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017840 | BAZ2A
Description
bromodomain adjacent to zinc finger domain, 2A [Source:HGNC Symbol;Acc:HGNC:962]
Coordinates
chr5:57154854-57156561:+
Coord C1 exon
chr5:57154854-57154998
Coord A exon
chr5:57155525-57156177
Coord C2 exon
chr5:57156339-57156561
Length
653 bp
Sequences
Splice sites
3' ss Seq
CTCTTCCCTTTGCTTTACAGTTC
3' ss Score
10.47
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
CGTCAGCTCTTCTTTCGAAAAAAGCTGCTTCACTCATCCCAGATGCTTCGAGCAGTCTCCTTGGGTCAGGACCGCTACAGACGCCGCTACTGGGTGTTGCCCTACTTGACTGGTATCTTTGTGGAAGGAACAGAGGGAAGCTTAG
Seq A exon
TTCCTGAGGATGTGATAAAACAGGAAACTGACTCCTTAAAAGTGGCAACCCATTCAACAACCAGCCCAACCTCCTTCTCTCTGAAGAGGGAGTTAGCTGGCTCCAGCACCTCTGCCAGTTCTCCTGCCCGGGCCCGAGGCCGACCTCGGAAAACTAAGCCTGGCTCTATGCAGCCTAGGCACTTGAAATCTCATTCCAAGGGTCAAGGTTCAGAAGAGCCTCAGACCCAGCTTCAGCCTGAGACTCAGTCCCATCCTCAGCTTCAGGCTCATGCCCAGCCCCAGCTTCAGTCCCATCCTCACACTCATAATGGGTTCCTGGAGCCAGAAGGCTCCCCATTGTCTCTGGGTCAGAGCCAGCATGACCTCAGCCAGTCAGCCTTCCTGTCTTGGCTGAGCCAGACTCAGAACCATGGCTCCCTGCTGAGCAGCTCAGTCCTCACGCCTGATAGCAGTCCCGGAAAACTGGACCCAGCCCCATCACATGCCCCAGAGGAGCCAGAACCTGACGAGACAGAAGCCAGCCCTGATTCTCAAGCTCCCTGGTTTAATTTCTCAGCCCAGATGCCCTGCAATGCTGCCCCTACACCACCCCCTGCAGTTTCTGAGGACCAGCCCACTCTTTCCCCTCAGCTACCTGCTTCTTCCAAGCCA
Seq C2 exon
GTGAGTAGAGCCAGTGCTGCCAACGCCTATTCTCCAGGGCCATTCTCTTCTACTCCTTTGCTGGGCATGGCTCATAAAAGGCAAGCAGGAGATCCTGGAGAAACACCACAGAGCCCCACAGGGCAAGGACAGCCAAAACGAAGAGGGAGACCTCCCAGTAAGTTCTTCAAACAGATGGAGCAGCGCTATCTAACCCAGCTGACAGCCCAGCCTGTCCCACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017840-'30-37,'30-36,31-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.061 A=0.991 C2=0.907
Domain overlap (PFAM):
C1:
PF156131=WHIM2=WD(100=61.2)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGCTTCACTCATCCCAGA
R:
CAGGTGGGACAGGCTGGG
Band lengths:
346-999
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]