RnoEX6030140 @ rn6
Exon Skipping
Gene
ENSRNOG00000053881 | Baz2a
Description
bromodomain adjacent to zinc finger domain, 2A [Source:RGD Symbol;Acc:1305037]
Coordinates
chr7:2543430-2545498:+
Coord C1 exon
chr7:2543430-2543574
Coord A exon
chr7:2544500-2545161
Coord C2 exon
chr7:2545276-2545498
Length
662 bp
Sequences
Splice sites
3' ss Seq
CTCTGTGTTTCTCTTTCCAGTTA
3' ss Score
11.61
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
CGTCAGCTCTTCTTTAGAAAAAAACTGCTTCACTCGTCCCAGATGCTTCGGGCAGTGTCCTTGGGTCAAGACCGCTTTAGACGCCATTACTGGGTCTTACCGTGTCTTGCTGGTATCTTTGTGGAAGGATCAGAGGGGAGTGCAG
Seq A exon
TTACTGAAGATGGAATAAAGCAAGAAACCGAGTCCTTGATGGAAGCAGTCACTTCAACGCCCAGCTCTGCCCAAGTCTCTGTAAAGAGGGAGCCAACGGGCTCTACCACCTCTACTTCTCCTGCCCGGTCCCGAGGGCGACCTCGAAAACCTAAGCCAGGGTCTCTGCAGCCTCAGCACCTTAAGTCCACCATTAGAGAACATGATTCAGAACAAGCCCAGTCTCAAGCTCACCCAAGAGCTCAGCCTCAGCCCCAGCCTCAGCCCCAGCCTCAGCCTCAGCCTCAGACTCCTATCCAGCCTCATCTTCAGTCAAGTAACGGGTTCCTAGAACCGGAAGGTTCCCCTTTCTCTCTGGGTCAGAGCCAGCACGACCTCAGCCAGTCTGCCTTCCTGTCTTGGCTGAGCCAGACTCAGAGCCACAACTCCCTGTTGAGCAGCTCAGTCCTCACGCCTGATAGCAGCCCCGGAAAATTAGACTCTGCTCCATCTCAGTCCTTAGAGGAGCCAGAGCCTGATGAGACACAACCCTGCCCTGGTCCTCAAGGTCCGTGGTTTAACTTCTCAGCCCAGATACCCTGTGATGCTGCTCCTACACCACCTCCTGCAGTGTCTGAGGACCAACCTACTCCCTCCCTCCAGCTGCCTGCCTCCTCTAAACCA
Seq C2 exon
ATGAATACACCAGGTGCTGCCAATCCTTGTTCTCCAGTGCAGCTTTCTTTCACCCACTTACCTGGAGGGGGCCCTAAGAGGCTATCTGGGGACTCTGAAGAAATACCACAGAGTCCCACAGGGCTGGGACAACCAAAACGGAGAGGGAGACCTCCTAGCAAGTTCTTCAAGCAGGTGGAGCAACATTACTTAACCCAGCTGACAGCCCAGCCTATCCCCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053881-'26-39,'26-37,27-39=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.122 A=0.991 C2=0.800
Domain overlap (PFAM):
C1:
PF156131=WHIM2=WD(100=61.2)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACTGCTTCACTCGTCCCAG
R:
GGGATAGGCTGGGCTGTCAG
Band lengths:
342-1004
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]