BtaEX6022806 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006010 | STAB2
Description
Bos taurus stabilin 2 (STAB2), mRNA. [Source:RefSeq mRNA;Acc:NM_001206679]
Coordinates
chr5:67717933-67725658:+
Coord C1 exon
chr5:67717933-67718128
Coord A exon
chr5:67719618-67719713
Coord C2 exon
chr5:67725613-67725658
Length
96 bp
Sequences
Splice sites
3' ss Seq
ATGGCTGTGTTTCCACTTAGTGT
3' ss Score
7.2
5' ss Seq
GTGGTAAGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
ACAAGAGAATGCTGCGCGGGCTACTTTGGCCCCCAGTGCCAGCCTTGCCCAGGGAAACCTGAGAACGTCTGCTTCGGAAATGGGATCTGCTTGGACGGAGTCAATGGCACAGGCGTGTGTGAGTGTGGGCGGGGCTTCAGCGGGACGGCCTGTGAGACCTGCGCTGAGGGCAAGTACGGCATCCACTGCGACCAAG
Seq A exon
TGTGTACTTGTGTCCATGGGAGATGCAATCAAGGACTCTTGGGTGATGGTTCCTGCGACTGTGACGTGGGCTGGCGAGGAGTGAAATGTGACAGTG
Seq C2 exon
CGATCACAAAAGACAACTGCAACGGGACCTGCCACACCAGTGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006010-'41-44,'41-43,42-44=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=47.0)
A:
NO
C2:
PF129472=EGF_3=PU(30.6=68.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCTGAGAACGTCTGCTTCG
R:
GGTCCCGTTGCAGTTGTCTTT
Band lengths:
170-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]