RnoEX0086552 @ rn6
Exon Skipping
Gene
ENSRNOG00000038948 | Stab2
Description
stabilin 2 [Source:RGD Symbol;Acc:628822]
Coordinates
chr7:27417265-27422804:-
Coord C1 exon
chr7:27422609-27422804
Coord A exon
chr7:27419448-27419543
Coord C2 exon
chr7:27417265-27417310
Length
96 bp
Sequences
Splice sites
3' ss Seq
GCAAATGTTTTTCTGCTTAGCAT
3' ss Score
4.46
5' ss Seq
TGGGTAAGC
5' ss Score
8.84
Exon sequences
Seq C1 exon
ACAAGAGCCTGCTGTGCTGGCTTCTTTGGCCCCCAGTGCCAAGCCTGCCCCGGGAGAGGTCAGAATGTGTGCTCTGGGAACGGCTTCTGTCTGGATGGCGTGAATGGCACTGGCACGTGCCAGTGCGGGCTGGGCTTCAGTGGGACAGCCTGTGAAACCTGCACTGAGGGGAAGTATGGTATCCACTGCGACCAAG
Seq A exon
CATGCTCTTGTGTCCATGGGAGATGTAGCCAAGGACCCTTGGGAGACGGCTCCTGTGACTGTGACGTCGGCTGGCGAGGAGTGAAGTGTGACATGG
Seq C2 exon
AGATCACCACAGACAACTGCAACGGGACCTGTCACACCAGTGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000038948-'45-47,'45-45,46-47
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=45.5)
A:
NO
C2:
PF129472=EGF_3=PU(30.6=68.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGAGGTCAGAATGTGTGC
R:
CGTTGCAGTTGTCTGTGGTGA
Band lengths:
169-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]