RnoALTA0038817-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000038948 | Stab2
Description
stabilin 2 [Source:RGD Symbol;Acc:628822]
Coordinates
chr7:27417265-27419543:-
Coord C1 exon
chr7:27419448-27419543
Coord A exon
NA
Coord C2 exon
chr7:27417265-27417310
Length
0 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGC
5' ss Score
8.84
3' ss Seq
CAACTGATCTTCTTTTTCAGAGA
3' ss Score
9.74
Exon sequences
Seq C1 exon
CATGCTCTTGTGTCCATGGGAGATGTAGCCAAGGACCCTTGGGAGACGGCTCCTGTGACTGTGACGTCGGCTGGCGAGGAGTGAAGTGTGACATGG
Seq A exon
NA
Seq C2 exon
AGATCACCACAGACAACTGCAACGGGACCTGTCACACCAGTGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000038948-46-47,46-46-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF129472=EGF_3=PU(30.6=68.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTCTTGTGTCCATGGGAGA
R:
CTGGTGTGACAGGTCCCGTT
Band lengths:
134-178
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]