BtaEX6023525 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002313 | ITPR2
Description
inositol 1,4,5-trisphosphate receptor type 2 [Source:RefSeq peptide;Acc:NP_776794]
Coordinates
chr5:83713189-83719552:+
Coord C1 exon
chr5:83713189-83713243
Coord A exon
chr5:83715390-83715425
Coord C2 exon
chr5:83719410-83719552
Length
36 bp
Sequences
Splice sites
3' ss Seq
AGCTCATGGATTACTGTCAGTCA
3' ss Score
0.56
5' ss Seq
CAGGCACAT
5' ss Score
0.04
Exon sequences
Seq C1 exon
AAGTAGAATATCCAGAAATTCTACCCCTAGGTATTTATCTTATTCTTCCTCACGA
Seq A exon
TCAACAACATTCAAAAACCAGCTATGTCAGAACCAG
Seq C2 exon
GATGTAGTGGCCTCCTTGGAGCAACAATTCAGCCCGATGATGCAGGCTGAATTCTCAGTGTTGGTTGATGTGTTGTACAGCCCAGAACTGCTGTTTCCCGAGGGAAGTGATGCGAGAATAAGATGTGGCGCTTTCATGTCGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002313-'47-45,'47-44,48-45=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.105 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATATCCAGAAATTCTACCCCTAGG
R:
ACAACACATCAACCAACACTGAGA
Band lengths:
125-161
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]