RnoEX6015640 @ rn6
Exon Skipping
Gene
ENSRNOG00000001804 | Itpr2
Description
inositol 1,4,5-trisphosphate receptor, type 2 [Source:RGD Symbol;Acc:69649]
Coordinates
chr4:180592068-180611048:-
Coord C1 exon
chr4:180610928-180611048
Coord A exon
chr4:180594727-180594917
Coord C2 exon
chr4:180592068-180592210
Length
191 bp
Sequences
Splice sites
3' ss Seq
CTCTCTCTTTTTTTTTTCAGCCA
3' ss Score
10.16
5' ss Seq
CAGGTACAA
5' ss Score
7.09
Exon sequences
Seq C1 exon
ACCCATCAGCCGGTCTTTATCCAGCTGCTGCAGTCCGCCTTCAGAATTTACAACTGCACCTGGCCCAACCCAGCCCAGAAAGCCTCCGTGGAATCCTGCATCAGAGCCCTGGCTGAAGTGG
Seq A exon
CCAAAAACCGTGGGATTGCGATTCCGGTGGATTTGGACAGCCAGGTCAACACACTCTTCATGAAGAATCACTCAAGTACAGTGCAGAGGGCGGCCATGGGCTGGAGGCTCTCTGCTCGCTCCGGACCTCGCTTCAAGGAAGCTCTTGGAGGGCCAGCATGGGACTACAGGAATATTATTGAAAAGTTACAG
Seq C2 exon
GATGTCGTGGCCTCTCTGGAACAGCAGTTCAGCCCCATGATGCAGGCTGAGTTCTCTGTGCTTGTGGATGTGCTGTACAGCCCGGAGCTACTGTTCCCAGAAGGAAGCGATGCCAGGATACGATGTGGTGCCTTCATGTCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001804-'46-44,'46-43,47-44=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGTCTTTATCCAGCTGCTG
R:
GACATGAAGGCACCACATCGT
Band lengths:
252-443
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]