RnoEX6015639 @ rn6
Exon Skipping
Gene
ENSRNOG00000001804 | Itpr2
Description
inositol 1,4,5-trisphosphate receptor, type 2 [Source:RGD Symbol;Acc:69649]
Coordinates
chr4:180594727-180613165:-
Coord C1 exon
chr4:180613037-180613165
Coord A exon
chr4:180610928-180611048
Coord C2 exon
chr4:180594727-180594917
Length
121 bp
Sequences
Splice sites
3' ss Seq
CATTTTCCTTTCATTTCCAGACC
3' ss Score
10.9
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
GTCTGCAACACCACCACGGACCGGAAACACGCAGACACCTTTCTGGAGAGGTGTGTGACAGAGTCAGTCATGAACATCGTGAGCGGCTTCTTCAACTCGCCGTTTTCGGATAACAGTACCAGCCTCCAG
Seq A exon
ACCCATCAGCCGGTCTTTATCCAGCTGCTGCAGTCCGCCTTCAGAATTTACAACTGCACCTGGCCCAACCCAGCCCAGAAAGCCTCCGTGGAATCCTGCATCAGAGCCCTGGCTGAAGTGG
Seq C2 exon
CCAAAAACCGTGGGATTGCGATTCCGGTGGATTTGGACAGCCAGGTCAACACACTCTTCATGAAGAATCACTCAAGTACAGTGCAGAGGGCGGCCATGGGCTGGAGGCTCTCTGCTCGCTCCGGACCTCGCTTCAAGGAAGCTCTTGGAGGGCCAGCATGGGACTACAGGAATATTATTGAAAAGTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001804-'44-43,'44-41,46-43=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSRNOT00000040645fB7098
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACACGCAGACACCTTTCTGG
R:
GCCCTCCAAGAGCTTCCTTGA
Band lengths:
257-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]