DreEX0040349 @ danRer10
Exon Skipping
Gene
ENSDARG00000011909 | itpr2
Description
inositol 1,4,5-trisphosphate receptor, type 2 [Source:ZFIN;Acc:ZDB-GENE-050419-192]
Coordinates
chr18:16030762-16032846:+
Coord C1 exon
chr18:16030762-16030890
Coord A exon
chr18:16031006-16031126
Coord C2 exon
chr18:16032668-16032846
Length
121 bp
Sequences
Splice sites
3' ss Seq
TTTATTATTTTTACCTTCAGGCT
3' ss Score
9.32
5' ss Seq
TCGGTGGGT
5' ss Score
6.9
Exon sequences
Seq C1 exon
GTGTCTATTGGCCCCACAGACAGGAAAAATGCTGACACAAGCCTTGAAAAATACGTCACTGATACCATCATGGCCATTGTCAAGGGCTTTTTTGGCTCCCAGTTTTCTGTCAGCAACTCTAAACTGCAG
Seq A exon
GCTCATCAAGCGACTTTTATAAAGTTGCTGCAGTCAGCCTGTAGACTATATAACTGCACATGGCTCAACTCCCTACAGAAGACCAACATTGAGGGCTGCATCAAAACACTTGCTGACGTCG
Seq C2 exon
CTAAGAGTCGGGCCATTCCTATTCCAGTGGACCTGGATGGTCAGGTCAATGCGCTATCACTGAAGACACACACCAGCATGGTGCAGCGAGCGGTTAAAGACTGGAGGCTGTCAGCCCGTGGACGACCCCGCAAGGAACCCTTTGGAGCACATGATTACAAGATCATTGAAAAACTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000011909-'37-39,'37-38,38-39
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCTATTGGCCCCACAGACA
R:
GCTGACAGCCTCCAGTCTTTA
Band lengths:
243-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]