GgaEX1030885 @ galGal3
Exon Skipping
Gene
ENSGALG00000014071 | ITPR2
Description
NA
Coordinates
chr1:69941890-69952266:-
Coord C1 exon
chr1:69952138-69952266
Coord A exon
chr1:69951434-69951554
Coord C2 exon
chr1:69941890-69942080
Length
121 bp
Sequences
Splice sites
3' ss Seq
GTTTATCTTTTTGTTTTTAGACA
3' ss Score
8.41
5' ss Seq
TGGGTAGGT
5' ss Score
6.86
Exon sequences
Seq C1 exon
GTTTGTAACACAACCACGGATCGTAAACATGCAGACACATCTCTGGAGAAATATGTCACTGAGCCTGTAATGAGCATTGTGAGTGGCTTCTTCAATTCTCCGTTTTCAGATAACAGCACCAGCCTCCAG
Seq A exon
ACACATCAACCTGTTTTTATTCAGCTACTGCAGTCTGCTTTTAGAATTTACAACTGTACCTGGCCAAACCCAACTCAGAAAGCCTCAGTGGAGTCATGTATCAAAACTTTGGCTGAAGTGG
Seq C2 exon
CGAAGAACCGTGGGATTGCAATTCCGGTGGATTTGGACAGCCAGGTCAACACCTTGTTCATGAAGAGTCACTCTAACATGGTGCAGAGGGCAGCCATGGGGTGGAGAATGTCAGCCCGCAGCGGACCACGTTTTAAAGAAGCTCTTGGTGGGCCTGCCTGGGATTACAGGAACATAATAGAAAAACTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014071-'36-40,'36-39,37-40=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCACGGATCGTAAACATGCA
R:
CTTTAAAACGTGGTCCGCTGC
Band lengths:
255-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]