RnoEX0045420 @ rn6
Exon Skipping
Gene
ENSRNOG00000001804 | Itpr2
Description
inositol 1,4,5-trisphosphate receptor, type 2 [Source:RGD Symbol;Acc:69649]
Coordinates
chr4:180610928-180625380:-
Coord C1 exon
chr4:180625255-180625380
Coord A exon
chr4:180613037-180613165
Coord C2 exon
chr4:180610928-180611048
Length
129 bp
Sequences
Splice sites
3' ss Seq
GTACTTTTCTTTCTCCCCAGGTC
3' ss Score
12.59
5' ss Seq
CAGGTAGCT
5' ss Score
6.52
Exon sequences
Seq C1 exon
GTAAAAATTGCATACGTGAACTTTGTCAACCATTGTTACGTTGACACAGAAGTGGAGATGAAGGAAATCTATACAAGTAACCACATTTGGAAGTTATTTGAGAACTTCTTGGTGGATATGGCAAGG
Seq A exon
GTCTGCAACACCACCACGGACCGGAAACACGCAGACACCTTTCTGGAGAGGTGTGTGACAGAGTCAGTCATGAACATCGTGAGCGGCTTCTTCAACTCGCCGTTTTCGGATAACAGTACCAGCCTCCAG
Seq C2 exon
ACCCATCAGCCGGTCTTTATCCAGCTGCTGCAGTCCGCCTTCAGAATTTACAACTGCACCTGGCCCAACCCAGCCCAGAAAGCCTCCGTGGAATCCTGCATCAGAGCCCTGGCTGAAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001804-'42-41,'42-39,44-41
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAATTGCATACGTGAACTTTGTCA
R:
CAGGGCTCTGATGCAGGATTC
Band lengths:
234-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]