DreEX6023173 @ danRer10
Exon Skipping
Gene
ENSDARG00000014655 | itpr1a
Description
inositol 1,4,5-trisphosphate receptor, type 1a [Source:ZFIN;Acc:ZDB-GENE-070604-3]
Coordinates
chr6:39965689-39966513:+
Coord C1 exon
chr6:39965689-39965814
Coord A exon
chr6:39965896-39966024
Coord C2 exon
chr6:39966393-39966513
Length
129 bp
Sequences
Splice sites
3' ss Seq
CATACTCAACTTTCCTTTAGGTG
3' ss Score
9.52
5' ss Seq
CAGGTAGCC
5' ss Score
7.13
Exon sequences
Seq C1 exon
GTGAAGATGGCCTACGTGAACTTCCTGAATCACTGTTATGTTGATACAGAGGTTGAGATGAAGGAGATCTACACCAGCAATCACATGTGGAAACTTTTTGATGATTTTCTGGTGGACGTCTGCAGA
Seq A exon
GTGTGCAATAACACAAGTGACCGTAAACACGCTGACACAGTTCTGGAGAGATACGTTACAGAGACCATAATGAGCATCGTCACCACCTTTTTCAGCTCACCATTCTCAGACCAGAGCACAAGTTTGCAG
Seq C2 exon
ACCCGGCAGCCGGTGTTTGTGCAGCTGCTGCAGGGAGTGTTTCGTGTATATCACTGCAACTGGCTTCTCCCAGGTCAGAAGGGGAATGTGGAAGCCTGCATCAAAGTGCTGAGTGACGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014655-'35-40,'35-39,36-40=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGCCTACGTGAACTTCCTG
R:
CCACGTCACTCAGCACTTTGA
Band lengths:
242-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]